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  1. ARTICLE: The Large srh Family of Chemoreceptor Genes in Caenorhabditis Nematodes Reveals Processes of Genome Evolution Involving Large Duplications and Deletions and Intron Gains and Losses
    • Hugh M. Robertson
    Genome Res. February 1, 2000 10: 192-203; doi:10.1101/gr.10.2.192
    ...analyses of the evolution of paralogous gene family members. I previously described the patterns of gene duplication, diversification, movement, and intron loss revealed by the large str and stl families of chemoreceptor genes in the Caenorhabditis elegans and Caenorhabditis briggsae s ( Robertson 1998...
  2. REPORT: Classification of Transmembrane Protein Families in the Caenorhabditis elegans Genome and Identification of Human Orthologs
    • Maido Remm and
    • Erik Sonnhammer
    Genome Res. November 1, 2000 10: 1679-1689; Published in Advance November 8, 2000, doi:10.1101/gr.GR-1491R
    ..., and intron loss. Genome Res. 8 : 449 – 463 . ↵ ( 2000 ) The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of evolution involving large duplications and deletions and intron gains and losses. Genome Res. 10 : 192 – 203 , ibid . ↵ Schuler G.D. ( 1997 ) Pieces...
  3. ARTICLE: Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae–C. elegans Genomic Alignment
    • W. James Kent and
    • Alan M. Zahler
    Genome Res. August 1, 2000 10: 1115-1125; doi:10.1101/gr.10.8.1115
    ...in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss. Genome Res. 8 : 449 – 463 . ↵ Shabalina S.A. , Kondrashov A.S. ( 1999 ) Pattern of selective constraint in C. elegans and C. briggsae s. Genet. Res. 74 : 23 – 30...
  4. LETTER: Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number
    • Scott William Roy and
    • Daniel L. Hartl
    Genome Res. June 2006 16: 750-756; Published in Advance May 15, 2006, doi:10.1101/gr.4845406
    ...and phase preferences. Mol. Biol. Evol. 21 : 1252 – 1263 . ↵ Robertson H.M. ( 1998 ) Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss. Genome Res. 8 : 449 – 463...
  5. LETTER: Evolution of Intron/Exon Structure of DEAD Helicase Family Genes in Arabidopsis, Caenorhabditis, and Drosophila
    • Nathalie Boudet,
    • Sébastien Aubourg,
    • Claire Toffano-Nioche,
    • Martin Kreis,
    • and Alain Lecharny
    Genome Res. December 1, 2001 11: 2101-2114; Published in Advance November 12, 2001, doi:10.1101/gr.200801
    ...Initiative 2000 ). Our results reveal that the intron number distribution per RH gene is clearly different in the three organisms. In AtRH s, the distribution is biphasic with a maximum at 0 to 1 and at 8 to 9 introns per gene, whereas there is only one strong maximum of 4 to 5 introns per gene in CeRH s...
  6. LETTER: The chemoreceptor superfamily in the honey bee, Apis mellifera: Expansion of the odorant, but not gustatory, receptor family
    • Hugh M. Robertson and
    • Kevin W. Wanner
    Genome Res. November 2006 16: 1395-1403; Published in Advance October 25, 2006, doi:10.1101/gr.5057506
    ..., and intron loss . Genome Res. 8 : 449 – 463 . Robertson, H.M. ( 2000 ) The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of evolution involving large duplications and deletions and intron gains and losses . Genome Res. 10 : 192 – 203 . Robertson, H.M. , Thomas, J...
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  7. ARTICLE: The Nuclear Receptor Superfamily Has Undergone Extensive Proliferation and Diversification in Nematodes
    • Ann E. Sluder,
    • Siuyien Wong Mathews,
    • David Hough,
    • Viravuth P. Yin,
    • and Claude V. Maina
    Genome Res. February 1, 1999 9: 103-120; doi:10.1101/gr.9.2.103
    .... briggsae , the process of NR proliferation and diversification also continued after the divergence of the two species. The Genomic Distribution of C. elegans NR Genes Reveals Extensive Duplication and Diversification on Chromosome V Over half of the predicted NR genes (145 of 228) lie on Chromosome V...
  8. ARTICLE: The Family of Caenorhabditis elegans Tyrosine Kinase Receptors: Similarities and Differences with Mammalian Receptors
    • Cornel Popovici,
    • Régine Roubin,
    • François Coulier,
    • Pierre Pontarotti,
    • and Daniel Birnbaum
    Genome Res. November 1, 1999 9: 1026-1039; doi:10.1101/gr.9.11.1026
    ...sequences revealed that the molecules located on each of the two chromosome II clusters form a separate branch and that both branches are grouped separately from the other chitinase genes of different species. Among the chitinase-like genes located on the other chromosomes, only M01B2.6 (on the same cosmid...
  9. ARTICLE: A Phylogeny of Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution
    • Soochin Cho,
    • Suk-Won Jin,
    • Adam Cohen,
    • and Ronald E. Ellis
    Genome Res. July 2004 14: 1207-1220; doi:10.1101/gr.2639304
    ...genes we studied were formed by earlier duplication events, comparisons between them reveal information about ancient changes in intron structure. RESULTS Each Caenorhabditis Species Has Four CPEB Genes and One FOG-3 Gene We used degenerate primers to clone homologs of FOG-3 and the CPEB gene FOG-1 from...
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