Searching journal content for articles similar to Riethman 7 (9): 853.

Displaying results 1-10 of 45

For checked items

view abstracts
download to citation manager

Select this article
LETTER: Closing the Gaps on Human Chromosome 19 Revealed Genes With a High Density of Repetitive Tandemly Arrayed Elements
- Sun-Hee Leem,
- Natalay Kouprina,
- Jane Grimwood,
- Jung-Hyun Kim,
- Michael Mullokandov,
- Young-Ho Yoon,
- Ji-Youn Chae,
- Jenna Morgan,
- Susan Lucas,
- Paul Richardson,
- Chris Detter,
- Tijana Glavina,
- Eddy Rubin,
- J. Carl Barrett,
- and Vladimir Larionov
Genome Res. February 2004 14: 239-246; Published in Advance January 12, 2004, doi:10.1101/gr.1929904
...in yeast can facilitate the rapid collection of additional clones for gap closure. The same strategy can be also applied for closing the gaps in other complex s. METHODS Construction of the TAR Vectors and Cloning by In Vivo Recombination in Yeast The TAR circularizing vectors, pVC-GAP1, pVC-GAP2, pVC-GAP3...
Select this article
Research: Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics
- Coralie Zangarelli,
- Olivier Arnaiz,
- Mickaël Bourge,
- Kevin Gorrichon,
- Yan Jaszczyszyn,
- Nathalie Mathy,
- Loïc Escoriza,
- Mireille Bétermier,
- and Vinciane Régnier
Genome Res. November/December 2022 32: 2028-2042; Published in Advance November 23, 2022, doi:10.1101/gr.277027.122
...to as “MIC-limited” DNA, are removed during PDE in Paramecium (Bétermier and Duharcourt 2014). At least 25% of the MIC , including DNA repeats (TEs, minisatellites), is eliminated imprecisely, alternatively leading to chromosome fragmentation (with de novo telomere addition to heterogeneous new MAC...
Select this article
Research: Third-generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants
- Jing Xia,
- Aarthi Venkat,
- Rachel E. Bainbridge,
- Michael L. Reese,
- Karine G. Le Roch,
- Ferhat Ay,
- and Jon P. Boyle
Genome Res. May 2021 31: 834-851; Published in Advance April 27, 2021, doi:10.1101/gr.262816.120
.... Although four chromosomes of the ToxoDB-48_TgME49 contained no telomeric repeat and seven were missing one of the telomeric repeats, all of the chromosome contigs in the TgME49 long-read assembly were assembled up until both telomeric caps (Supplemental Table S5). Both telomeres were found in 12 out...
OPEN ACCESS ARTICLE
Select this article
Research: Rearrangement of macronucleus chromosomes correspond to TAD-like structures of micronucleus chromosomes in Tetrahymena thermophila
- Zhengyu Luo,
- Tengfei Hu,
- Hong Jiang,
- Ruoyu Wang,
- Qianlan Xu,
- Simo Zhang,
- Jun Cao,
- and Xiaoyuan Song
Genome Res. March 2020 30: 406-414; Published in Advance March 12, 2020, doi:10.1101/gr.241687.118
...distinct nuclei of T. thermophila using the Hi-C and HiChIP methods. We found that the meiotic crescent MIC has a specific chromosome interaction pattern, with all the telomeres or centromeres on the five MIC chromosomes clustering together, respectively, which is also helpful to identify the midpoints...
Select this article
Research: Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
- Kazuaki Yamaguchi,
- Yoshinobu Uno,
- Mitsutaka Kadota,
- Osamu Nishimura,
- Ryo Nozu,
- Kiyomi Murakumo,
- Rui Matsumoto,
- Keiichi Sato,
- and Shigehiro Kuraku
Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
...with short reads. The resultant sequences were further scaffolded using Hi-C data obtained from blood cell nuclei of the same individual (see Methods). The number of output scaffold sequences longer than 1 Mbp (thereafter tentatively designated “chromosomes”) was 50, which closely approximates its chromosome...
OPEN ACCESS ARTICLE
Select this article
Resource: Recompleting the Caenorhabditis elegans genome
- Jun Yoshimura,
- Kazuki Ichikawa,
- Massa J. Shoura,
- Karen L. Artiles,
- Idan Gabdank,
- Lamia Wahba,
- Cheryl L. Smith,
- Mark L. Edgley,
- Ann E. Rougvie,
- Andrew Z. Fire,
- Shinichi Morishita,
- and Erich M. Schwarz
Genome Res. June 2019 29: 1009-1022; Published in Advance May 23, 2019, doi:10.1101/gr.244830.118
...reassembly.Closing gaps with multiple assembliesEach VC2010 assembly had 76–202 gaps (median, 111 gaps) (Supplemental Table S2). To fill them, we ordered all contigs of the seven assemblies along the six C. elegans nuclear chromosomes and mitochondrial chromosome by aligning them to the N2 reference assembly...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: Characterization of Physical Gap Sizes at Human Telomeres
- Christa M. Lese,
- Judy A. Fantes,
- Harold C. Riethman,
- and David H. Ledbetter
Genome Res. September 1, 1999 9: 888-894; doi:10.1101/gr.9.9.888
...chromosome 1q. Genomics 22 : 569 – 578 . ↵ Riethman H. ( 1997 ) Closing in on telomeric closure. Genome Res. 7 : 853 – 855 . ↵ Riethman H.C. , Moyzis R.K. , Meyne J. , Burke D.T. , Olson M.V. ( 1989 ) Cloning human telomeric DNA fragments into Saccharomyces cerevesiae using a yeast artificial chromosome...
Select this article
Research: Venus flytrap carnivorous lifestyle builds on herbivore defense strategies
- Felix Bemm,
- Dirk Becker,
- Christina Larisch,
- Ines Kreuzer,
- Maria Escalante-Perez,
- Waltraud X. Schulze,
- Markus Ankenbrand,
- Anna-Lena Van de Weyer,
- Elzbieta Krol,
- Khaled A. Al-Rasheid,
- Axel Mithöfer,
- Andreas P. Weber,
- Jörg Schultz,
- and Rainer Hedrich
Genome Res. June 2016 26: 812-825; Published in Advance May 4, 2016, doi:10.1101/gr.202200.115
...mechano-electric stimulation of a trigger hair sets the trap to an “attention mode.” In other words, a one touch-induced AP is memorized but does not close the trap. With a second AP, the Dionaea trap closes within a fraction of a second (Forterre et al. 2005; Escalante-Perez et al. 2014), locking...
OPEN ACCESS ARTICLE
Select this article
Method: Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- Nicholas H. Putnam,
- Brendan L. O'Connell,
- Jonathan C. Stites,
- Brandon J. Rice,
- Marco Blanchette,
- Robert Calef,
- Christopher J. Troll,
- Andrew Fields,
- Paul D. Hartley,
- Charles W. Sugnet,
- David Haussler,
- Daniel S. Rokhsar,
- and Richard E. Green
Genome Res. March 2016 26: 342-350; Published in Advance February 4, 2016, doi:10.1101/gr.193474.115
...-closingmodule of meraculous, which returns a gap-closing sequence when a unique closure can be inferred by local k-mer walking. Data access The HiRise scaffolder source code used here (version 0.75) is available in the Supplemental Material and hosted on GitHub at https://github.com/DovetailGenomics/HiRise_July2015_GR...
OPEN ACCESS ARTICLE
Select this article
Resource: Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- Valerie A. Schneider,
- Tina Graves-Lindsay,
- Kerstin Howe,
- Nathan Bouk,
- Hsiu-Chuan Chen,
- Paul A. Kitts,
- Terence D. Murphy,
- Kim D. Pruitt,
- Françoise Thibaud-Nissen,
- Derek Albracht,
- Robert S. Fulton,
- Milinn Kremitzki,
- Vincent Magrini,
- Chris Markovic,
- Sean McGrath,
- Karyn Meltz Steinberg,
- Kate Auger,
- William Chow,
- Joanna Collins,
- Glenn Harden,
- Timothy Hubbard,
- Sarah Pelan,
- Jared T. Simpson,
- Glen Threadgold,
- James Torrance,
- Jonathan M. Wood,
- Laura Clarke,
- Sergey Koren,
- Matthew Boitano,
- Paul Peluso,
- Heng Li,
- Chen-Shan Chin,
- Adam M. Phillippy,
- Richard Durbin,
- Richard K. Wilson,
- Paul Flicek,
- Evan E. Eichler,
- and Deanna M. Church
Genome Res. May 2017 27: 849-864; Published in Advance April 10, 2017, doi:10.1101/gr.213611.116
...is the first coordinate-changing assembly update since 2009; it reflects the resolution of roughly 1000 issues and encompasses modifications ranging from thousands of single base changes to megabase-scale path reorganizations, gap closures, and localization of previously orphaned sequences. We developed a new...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Riethman 7 (9): 853.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: