Searching journal content for articles similar to Rhie et al. 28 (3): 310.

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  1. Research: Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells
    • Belle A. Moyers,
    • E. Christopher Partridge,
    • Mark Mackiewicz,
    • Michael J. Betti,
    • Roshan Darji,
    • Sarah K. Meadows,
    • Kimberly M. Newberry,
    • Laurel A. Brandsmeier,
    • Barbara J. Wold,
    • Eric M. Mendenhall,
    • and Richard M. Myers
    Genome Res. November 2023 33: 1879-1892; Published in Advance October 18, 2023, doi:10.1101/gr.278205.123
    ...accurate correlation between predictions and observation (Fig. 2A), comparable with neural network models based on large amounts of sequence data (Agarwal and Shendure 2020). Prediction accuracy was robust to promoter subtypes (CpG island [CGI] promoters and non-CGI promoters) and was applicable across...
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  2. Method: The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells
    • Mireia Jordà,
    • Anna Díez-Villanueva,
    • Izaskun Mallona,
    • Berta Martín,
    • Sergi Lois,
    • Víctor Barrera,
    • Manel Esteller,
    • Tanya Vavouri,
    • and Miguel A. Peinado
    Genome Res. January 2017 27: 118-132; Published in Advance December 20, 2016, doi:10.1101/gr.207522.116
    ...contained fewer CpGs and were embedded in regions poor in CpG content when compared with Alu repeats with stable methylation in the tumor ( Fig. 2 A; Supplemental Table S7 ). Another striking feature of Alu repeats unmethylated in all tissues was their proximity to transcription start sites (TSS) and CpG...
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