Searching journal content for articles similar to Regulski et al. 23 (10): 1651.

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  1. Research: Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza
    • Rodolphe Dombey,
    • Daniel Buendía-Ávila,
    • Verónica Barragán-Borrero,
    • Laura Diezma-Navas,
    • Arturo Ponce-Mañe,
    • José Mario Vargas-Guerrero,
    • Rana Elias,
    • and Arturo Marí-Ordóñez
    Genome Res. March 2025 35: 522-544; Published in Advance March 4, 2025, doi:10.1101/gr.279532.124
    ...: arturo.mari-ordonez@gmi.oeaw.ac.atAbstractA handful of model plants have provided insight into silencing of transposable elements (TEs) through RNA-directed DNA methylation (RdDM). Guided by 24 nt long small-interfering RNAs (siRNAs), this epigenetic regulation installs DNA methylation and histone...
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  2. Research: A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
    • Alexandros Bousios,
    • Concepcion M. Diez,
    • Shohei Takuno,
    • Vojtech Bystry,
    • Nikos Darzentas,
    • and Brandon S. Gaut
    Genome Res. February 2016 26: 226-237; Published in Advance December 2, 2015, doi:10.1101/gr.193763.115
    ...double-stranded RNA (dsRNA) (Matzke and Mosher 2014). The dsRNA is then cleaved by Dicer-like 2 or 4 (DCL2/DCL4) to generate 21–22 nucleotide (nt) small interfering RNAs (siRNAs); these are loaded onto Argonaute 1 or 2 (AGO1/ AGO2) and guide the cleavage of TE mRNA through RNA interference (RNAi...
  3. Research: Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
    • Kazumasa Shirai,
    • Mitsuhiko P. Sato,
    • Ranko Nishi,
    • Masahide Seki,
    • Yutaka Suzuki,
    • and Kousuke Hanada
    Genome Res. June 2021 31: 1060-1068; Published in Advance May 18, 2021, doi:10.1101/gr.271726.120
    ...types were concentrated in the promoter regions, from 3 kb upstream of the transcriptional start sites to the termination sites (Fig. 1A). The expression levels of the 24,030 genes in the 620 accessions were obtained from the RNA-seq data presented in Kawakatsu et al. (2016) (Supplemental Table S2...
  4. Research: Hidden variation in polyploid wheat drives local adaptation
    • Laura-Jayne Gardiner,
    • Ryan Joynson,
    • Jimmy Omony,
    • Rachel Rusholme-Pilcher,
    • Lisa Olohan,
    • Daniel Lang,
    • Caihong Bai,
    • Malcolm Hawkesford,
    • David Salt,
    • Manuel Spannagl,
    • Klaus F.X. Mayer,
    • John Kenny,
    • Michael Bevan,
    • Neil Hall,
    • and Anthony Hall
    Genome Res. September 2018 28: 1319-1332; Published in Advance August 9, 2018, doi:10.1101/gr.233551.117
    ....Epigenetic states of genes in crop plants have been shown to have a major influence on traits. Gene body methylation (gbM) can influence splice-site efficiency by differential methylation of splice acceptor sites, indicating that epiallelic variation can contribute to differential mRNA accumulation (Regulski et al...
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  5. Research: DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
    • Steven R. Eichten,
    • Tim Stuart,
    • Akanksha Srivastava,
    • Ryan Lister,
    • and Justin O. Borevitz
    Genome Res. November 2016 26: 1520-1531; Published in Advance September 9, 2016, doi:10.1101/gr.205468.116
    ...that are DTT elements). The DTT elements appear to be some of the smaller transposons within the Brachypodium annotation and are often found near genes (Supplemental Fig. S5). The DTT elements maybe targets of RNA-directedDNAmethylation (RdDM) through the activity of 24-nt siRNAs (Matzke and Mosher 2014...
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