Searching journal content for articles similar to Ravasi et al. 13 (6b): 1430.

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  1. Research: Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants
    • Metewo Selase Enuameh,
    • Yuna Asriyan,
    • Adam Richards,
    • Ryan G. Christensen,
    • Victoria L. Hall,
    • Majid Kazemian,
    • Cong Zhu,
    • Hannah Pham,
    • Qiong Cheng,
    • Charles Blatti,
    • Jessie A. Brasefield,
    • Matthew D. Basciotta,
    • Jianhong Ou,
    • Joseph C. McNulty,
    • Lihua J. Zhu,
    • Susan E. Celniker,
    • Saurabh Sinha,
    • Gary D. Stormo,
    • Michael H. Brodsky,
    • and Scot A. Wolfe
    Genome Res. June 2013 23: 928-940; Published in Advance March 7, 2013, doi:10.1101/gr.151472.112
    .... melanogaster . (A) Distribution of the number of fingers identified within each zinc-finger-containing gene in the fruit fly . (B) A schematic depicting canonical DNA recognition by a Cys2-His2 zinc finger. The numbered spheres on the a-helix represent the residues that are anticipated to contact DNA...
  2. ARTICLE: Impact of Alternative Initiation, Splicing, and Termination on the Diversity of the mRNA Transcripts Encoded by the Mouse Transcriptome
    • Mihaela Zavolan,
    • Shinji Kondo,
    • Christian Schönbach,
    • Jun Adachi,
    • David A. Hume,
    • RIKEN GER Group,
    • GSL Members,
    • Yoshihide Hayashizaki,
    • and Terry Gaasterland
    Genome Res. June 2003 13: 1290-1300; doi:10.1101/gr.1017303
    ...of polypyrimidine-tract-binding protein. MouSDB: The Database of Splice Variants Identified in the Mouse Transcriptome All multitranscript clusters that we identified in this data set have been deposited in a Postgres database that can be queried via a Web interface at http://s.rockefeller.edu/MouSDB . We expanded...
  3. Research: Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs
    • Michael Schnall-Levin,
    • Olivia S. Rissland,
    • Wendy K. Johnston,
    • Norbert Perrimon,
    • David P. Bartel,
    • and Bonnie Berger
    Genome Res. September 2011 21: 1395-1403; Published in Advance June 17, 2011, doi:10.1101/gr.121210.111
    ...lost are shown as noncanonical zinc fingers. In cases where a single zinc finger contains both 8mer and 7mer sites, the 7mer overlaps the second cysteine in the motif. Table 1. Annotated miRNAs with repeated coding-region sites in many genes Family miRNAs 8mer site miRNA conservation Genes with $4...
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  4. COMMENTARY: A Guide to the Mammalian Genome
    • Yasushi Okazaki and
    • David A. Hume
    Genome Res. June 2003 13: 1267-1272; doi:10.1101/gr.1445603
    ...characterization of the zinc-finger-containing proteins in the mouse transcriptome. Genome Res. (this issue). ↵ Schriml, L.M., Hill, D.P., Blake, J.A., Bono, H., Wynshaw-Boris, A., Pavan, W.J., Ring, B.J., Beisel, K., Setou, M., RIKEN GER Group and GSL Members, et al. 2003 . Human disease genes and their cloned...
  5. Methods: A Gateway-Compatible Yeast One-Hybrid System
    • Bart Deplancke,
    • Denis Dupuy,
    • Marc Vidal,
    • and Albertha J.M. Walhout
    Genome Res. October 15, 2004 14: 2093-2101; doi:10.1101/gr.2445504
    ...interactors. F22D6.2 is a zinc-finger-containing protein with unassigned function or anatomic expression pattern. NHR-123 is a novel nuclear hormone receptor that has not been studied in C. elegans . However, NHR-123 exhibits significant homology with the human vitamin D3 receptor (VDR). Interestingly, VDR...
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