Searching journal content for articles similar to Ranz et al. 14 (3): 373.

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  1. Research: Tempo and mode of regulatory evolution in Drosophila
    • Joseph D. Coolon,
    • C. Joel McManus,
    • Kraig R. Stevenson,
    • Brenton R. Graveley,
    • and Patricia J. Wittkopp
    Genome Res. May 2014 24: 797-808; Published in Advance February 24, 2014, doi:10.1101/gr.163014.113
    ...to determine the tempo and mode of regulatory evolution among four divergent strains and species of Drosophila. This technique is better suited for interspecific comparisons than microarrays because it uses full sequence information instead of hybridization signals to determine gene expression levels, allowing...
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  2. Research: Evolution of splicing regulatory networks in Drosophila
    • C. Joel McManus,
    • Joseph D. Coolon,
    • Jodi Eipper-Mains,
    • Patricia J. Wittkopp,
    • and Brenton R. Graveley
    Genome Res. May 2014 24: 786-796; Published in Advance February 10, 2014, doi:10.1101/gr.161521.113
    .... All data used in this study were obtained from adult female flies 2- to 10-d post eclosion grown on standard Drosophila media. Specific conditions for the D. melanogaster strain zhr carrying the hybrid rescuing Zhr1 chromosome [full genotype, XYS.YL.Df(1)Zhr]; (Sawamura et al. 1993; Ferree and Barbash...
  3. Research: Regulatory divergence in Drosophila revealed by mRNA-seq
    • C. Joel McManus,
    • Joseph D. Coolon,
    • Michael O. Duff,
    • Jodi Eipper-Mains,
    • Brenton R. Graveley,
    • and Patricia J. Wittkopp
    Genome Res. June 2010 20: 816-825; Published in Advance March 30, 2010, doi:10.1101/gr.102491.109
    ...RNA-seq data (mixed parental: R2 = 0.84; F1 hybrids: R2 = 0.91; Fig. 1D). Wide-spread expression divergence between Drosophila species To characterize expression divergence between D. melanogaster and D. sechellia, we compared total levels of gene expression for Genome Research 817 www..org Interspecific...
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  4. Research: The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression
    • Colin D. Meiklejohn,
    • Joseph D. Coolon,
    • Daniel L. Hartl,
    • and Patricia J. Wittkopp
    Genome Res. January 2014 24: 84-95; Published in Advance September 16, 2013, doi:10.1101/gr.156414.113
    ...introgression hybrids, we examined the genetic basis for divergence in -wide patterns of gene expression between Drosophila simulans and Drosophila mauritiana. We find that cis-regulatory and trans-regulatory divergences differ significantly in patterns of genetic architecture and evolution. The effects of cis...
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  5. Research: Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
    • Wesley A. Brashear,
    • Terje Raudsepp,
    • and William J. Murphy
    Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
    ...–664. doi:10.1101/gr.229202 ↵Khost DE, Eickbush DG, Larracuente AM. 2017. Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster. Genome Res 27: 709–721. doi:10.1101/gr.213512.116 ↵Kitchener AC, Breitenmoser-Würsten C, Eizirik E, Gentry A...
  6. Research: Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
    • C. Joel McManus,
    • Gemma E. May,
    • Pieter Spealman,
    • and Alan Shteyman
    Genome Res. March 2014 24: 422-430; Published in Advance December 6, 2013, doi:10.1101/gr.164996.113
    ...-Berger R, Harshman L, Kopp A, Vacha S, Nuzhdin S, Wayne M. 2004. Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167: 1791–1799. Graze RM,Novelo LL, AminV, Fear JM, Casella G,Nuzhdin SV,Mcintyre LM. 2012. Allelic imbalance inDrosophilahybrid heads: Exons...
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  7. REVIEW: Allelic variation and heterosis in maize: How do two halves make more than a whole?
    • Nathan M. Springer and
    • Robert M. Stupar
    Genome Res. March 2007 17: 264-275; Published in Advance January 25, 2007, doi:10.1101/gr.5347007
    ...expression outside of the parental range ( Vuylsteke et al. 2005 ). A well-designed experiment in Drosophila melanogaster also found prevalent nonadditive expression in hybrids. In fact, the gene expression patterns of the two inbred parents were more similar to each other’s than to the hybrids’ ( Gibson et...
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