Searching journal content for articles similar to Pym and Brosch 10 (12): 1837.

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  1. Research: After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
    • Amine Namouchi,
    • Xavier Didelot,
    • Ulrike Schöck,
    • Brigitte Gicquel,
    • and Eduardo P.C. Rocha
    Genome Res. April 2012 22: 721-734; Published in Advance February 29, 2012, doi:10.1101/gr.129544.111
    ...1994 and 2000 (LoBue et al. 2003). 6. Many animal hosts, including;30% of the human population, carry the tubercle bacilli for very large periods of time. Coresidence and coinfection of different MTBC strains, and mycobacteria outside theMTBCclade, suggest that adaptations tohosts do not preclude...
  2. Method: Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe
    • Gerry Tonkin-Hill,
    • Rebecca A. Gladstone,
    • Anna K. Pöntinen,
    • Sergio Arredondo-Alonso,
    • Stephen D. Bentley,
    • and Jukka Corander
    Genome Res. January 2023 33: 129-140; Published in Advance January 20, 2023, doi:10.1101/gr.277340.122
    ...than a difference in the dynamics of HGT. Here, we introduce Panstripe, a method based on generalized linear regression that is robust to population structure, sampling bias, and errors in the predicted presence/absence of genes. We show using simulations that Panstripe can effectively identify...
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  3. RESOURCE: Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans
    • Jacqueline E. Schein,
    • Kristin L. Tangen,
    • Readman Chiu,
    • Heesun Shin,
    • Klaus B. Lengeler,
    • William Kim MacDonald,
    • Ian Bosdet,
    • Joseph Heitman,
    • Steven J.M. Jones,
    • Marco A. Marra,
    • and James W. Kronstad
    Genome Res. September 1, 2002 12: 1445-1453; Published in Advance August 21, 2002, doi:10.1101/gr.81002
    ...neoformans var. neoformans strains of serotypes A and D. J. Clin. Microbiol. 36 : 2200 – 2204 . ↵ Gordon S.V. , Brosch R. , Billault A. , Garnier T. , Eiglmeier K. , Cole S.T. ( 1999 ) Identification of variable regions in the s of tubercle bacilli using bacterial artificial chromosome arrays. Mol. Microbiol...
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