Searching journal content for articles similar to Prochazka 6 (7): 646.

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  1. Method: RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells
    • Christopher Jen-Yue Wei and
    • Kun Zhang
    Genome Res. April 2020 30: 602-610; Published in Advance March 3, 2020, doi:10.1101/gr.255851.119
    ...by running HipSTR on all single cells simultaneously using default values. HipSTR allelotypes were filtered to require a minimum 0.7 posterior probability of the genotype call. The resulting microsatellite allelotype consisted of a list of diploid microsatellite subunit counts for each single cell...
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  2. Method: HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay
    • Jia Lv,
    • Wenqian Jiao,
    • Haobing Guo,
    • Pingping Liu,
    • Ruijia Wang,
    • Lingling Zhang,
    • Qifan Zeng,
    • Xiaoli Hu,
    • Zhenmin Bao,
    • and Shi Wang
    Genome Res. December 2018 28: 1919-1930; Published in Advance November 8, 2018, doi:10.1101/gr.235820.118
    ...as a missing genotype. HipSTR (Willems et al. 2017) was used to genotype microsatellite with def-stutter-model and at least five reads were required to genotype a locus. RMSE and R2 values were calculated for quantitatively evaluating the concordance between replicative assays.High-quality reads generated from...
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  3. Review: Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
    • Terence Gall-Duncan,
    • Nozomu Sato,
    • Ryan K.C. Yuen,
    • and Christopher E. Pearson
    Genome Res. January 2022 32: 1-27; Published in Advance December 29, 2021, doi:10.1101/gr.269530.120
    ...Project notoriously struggled with TR stretches and, in fact, there are still regions with long TRs yet to be correctly assembled—for example, the classical satellite repeats I-IV (Miga 2015). Shorter simple tandem repeats (STR), with 1- to 6-bp motif units, were also underrecognized, with recent...
  4. REVIEW: Multiplex PCR: advantages, development, and applications.
    • M C Edwards and
    • R A Gibbs
    Genome Res. February 1994 3: S65-S75
    ...markers in Xp21 between DXS28 (C7) and DMD. Genomics 13 : 957 – 961 . 61.. Beckmann, J.S. , Weber. J.L. Beckmann, J.S. and Weber. J.L. 1991 . Survey of human and rat microsatellites. Genomics 12 : 627 – 631 . 62.. Edwards, A., , Hammond, H.A. , Jin, L. , Caskey, C.T. , Chakroborty. R. Edwards, A., Hammond...
  5. METHODS: Loss of Heterozygosity Analysis Using Whole Genome Amplification, Cell Sorting, and Fluorescence-Based PCR
    • Thomas G. Paulson,
    • Patricia C. Galipeau,
    • and Brian J. Reid
    Genome Res. May 1, 1999 9: 482-491; doi:10.1101/gr.9.5.482
    ...classification of LOH exists if an impure sample containing only a subset of cells with LOH is analyzed with a low-sensitivity STR. Neither fluorescent primer dye nor size or sequence of the microsatellite repeat were characteristic of STR sensitivity for detecting LOH. It remains possible that the particular...
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