Searching journal content for articles similar to Prabhu and Pe'er 19 (7): 1254.

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  1. Method: CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes
    • Marzia Rossato,
    • Luca Marcolungo,
    • Luca De Antoni,
    • Giulia Lopatriello,
    • Elisa Bellucci,
    • Gaia Cortinovis,
    • Giulia Frascarelli,
    • Laura Nanni,
    • Elena Bitocchi,
    • Valerio Di Vittori,
    • Leonardo Vincenzi,
    • Filippo Lucchini,
    • Kirstin E. Bett,
    • Larissa Ramsay,
    • David James Konkin,
    • Massimo Delledonne,
    • and Roberto Papa
    Genome Res. May 2023 33: 787-797; Published in Advance May 1, 2023, doi:10.1101/gr.277628.122
    ...CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant s Marzia Rossato1,2,6, Luca Marcolungo1,6, Luca De Antoni1, Giulia Lopatriello1, Elisa Bellucci3, Gaia Cortinovis3, Giulia Frascarelli3, Laura Nanni3, Elena Bitocchi3, Valerio Di Vittori3, Leonardo Vincenzi1, Filippo...
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  2. METHODS: Efficient High-Throughput Resequencing of Genomic DNA
    • Raymond D. Miller,
    • Shenghui Duan,
    • Elizabeth G. Lovins,
    • Ellen F. Kloss,
    • and Pui-Yan Kwok
    Genome Res. April 1, 2003 13: 717-720; Published in Advance March 12, 2003, doi:10.1101/gr.886203
    ...species including orangutan compared with human DNA, has provided an additional means to scan for variation ( Taillon-Miller et al. 1999 ; Miller et al. 2001 ). Our group has developed a high-throughput pipeline using targeted resequencing of pooled human DNAs as a means to characterize the allele...
  3. Methods: A probabilistic approach for SNP discovery in high-throughput human resequencing data
    • Rose Hoberman,
    • Joana Dias,
    • Bing Ge,
    • Eef Harmsen,
    • Michael Mayhew,
    • Dominique J. Verlaan,
    • Tony Kwan,
    • Ken Dewar,
    • Mathieu Blanchette,
    • and Tomi Pastinen
    Genome Res. September 2009 19: 1542-1552; Published in Advance July 15, 2009, doi:10.1101/gr.092072.109
    ...Gill University Health Centre (MUHC), McGill University, Montréal H36 1A4, Canada Abstract New high-throughput sequencing technologies are generating large amounts of sequence data, allowing the development of targeted large-scale resequencing studies. For these studies, accurate identification...
  4. Method: Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories
    • Alexandra Pokhilko,
    • Adam E. Handel,
    • Fabiola Curion,
    • Viola Volpato,
    • Emma S. Whiteley,
    • Sunniva Bøstrand,
    • Sarah E. Newey,
    • Colin J. Akerman,
    • Caleb Webber,
    • Michael B. Clark,
    • Rory Bowden,
    • and M. Zameel Cader
    Genome Res. June 2021 31: 1069-1081; Published in Advance May 19, 2021, doi:10.1101/gr.273961.120
    ...developing state of Lab E neurons. These results show that scCapture-seq can also be successfully applied to other sets of capture pools, including NG genes, to facilitate the identification of the disease genes in different cell types.DiscussionWe applied targeted sequencing to a large set of biologically...
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  5. Method: Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
    • Nadin Rohland and
    • David Reich
    Genome Res. May 2012 22: 939-946; Published in Advance January 20, 2012, doi:10.1101/gr.128124.111
    ...Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture Nadin Rohland 1 and David Reich Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA; Broad Institute of Harvard and MIT, Cambridge...
  6. Method: High-throughput discovery of rare insertions and deletions in large cohorts
    • Francesco L.M. Vallania,
    • Todd E. Druley,
    • Enrique Ramos,
    • Jue Wang,
    • Ingrid Borecki,
    • Michael Province,
    • and Robi D. Mitra
    Genome Res. December 2010 20: 1711-1718; Published in Advance November 1, 2010, doi:10.1101/gr.109157.110
    ...of tobacco exposure. Nature 463: 184– 190. Prabhu S, Pe’er I. 2009. Overlapping pools for high-throughput targeted resequencing. Genome Res 19: 1254–1261. Reich DE, Lander ES. 2001. On the allelic spectrum of human disease. Trends Genet 17: 502–510. Stenson PD, Mort M, Ball EV, Howells K, Phillips AD, Thomas...
  7. Methods: Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays
    • Christopher W. Wong,
    • Thomas J. Albert,
    • Vinsensius B. Vega,
    • Jason E. Norton,
    • David J. Cutler,
    • Todd A. Richmond,
    • Lawrence W. Stanton,
    • Edison T. Liu,
    • and Lance D. Miller
    Genome Res. March 2004 14: 398-405; doi:10.1101/gr.2141004
    ...Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays Christopher W. Wong 1 , 4 , Thomas J. Albert 2 , Vinsensius B. Vega 1 , Jason E. Norton 2 , David J. Cutler 3 , Todd A. Richmond 2...
  8. Method: High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
    • Adam D. Ewing and
    • Haig H. Kazazian, Jr
    Genome Res. September 2010 20: 1262-1270; Published in Advance May 20, 2010, doi:10.1101/gr.106419.110
    ...High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes Adam D. Ewing and Haig H. Kazazian Jr 1 University of Pennsylvania Department of Genetics, Philadelphia, Pennsylvania 19104, USA...
  9. Methods: Direct multiplex sequencing (DMPS)—a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA
    • Mathias Stiller,
    • Michael Knapp,
    • Udo Stenzel,
    • Michael Hofreiter,
    • and Matthias Meyer
    Genome Res. October 2009 19: 1843-1848; Published in Advance July 27, 2009, doi:10.1101/gr.095760.109
    .... This is due to the fact that target regionsmust still be reconstructed through PCR amplification of short overlapping fragments. Barcoding methods were developed for sequencing many different PCR products in parallel on a high-throughput platform (Binladen et al. 2007; Meyer et al. 2007...
  10. Resource: A calibrated human Y-chromosomal phylogeny based on resequencing
    • Wei Wei,
    • Qasim Ayub,
    • Yuan Chen,
    • Shane McCarthy,
    • Yiping Hou,
    • Ignazio Carbone,
    • Yali Xue,
    • and Chris Tyler-Smith
    Genome Res. February 2013 23: 388-395; Published in Advance October 4, 2012, doi:10.1101/gr.143198.112
    ...DP 2; Qual 3; SnpCluster 5,10; MinAltBases 2; MinMQ 10; SnpGap 3). NA21313 High-coverage sequencing High-coverage sequence information was generated by amplifying 5- to 6-kb overlapping fragments by long PCR. Approximately equimolar amounts of PCR fragments were pooled and used for library preparation...
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