Searching journal content for articles similar to Prabh and Rödelsperger 32 (7): 1315.

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  1. Research: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
    • Anna Grandchamp,
    • Lucas Kühl,
    • Marie Lebherz,
    • Kathrin Brüggemann,
    • John Parsch,
    • and Erich Bornberg-Bauer
    Genome Res. June 2023 33: 872-890; Published in Advance July 13, 2023, doi:10.1101/gr.277482.122
    ...or with reproduction. Both of these processes are well known for their fast genetic turnover and adaptation.To ascertain that a candidate de novo gene did not emerge via a duplication or transposition event, the gene must not show homology with any other gene in the species in which it emerged and to any other gene...
  2. Research: Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes
    • Neel Prabh,
    • Waltraud Roeseler,
    • Hanh Witte,
    • Gabi Eberhardt,
    • Ralf J. Sommer,
    • and Christian Rödelsperger
    Genome Res. November 2018 28: 1664-1674; Published in Advance September 19, 2018, doi:10.1101/gr.234971.118
    ..., Bemm F, Sommer RJ. 2017. Single-molecule sequencing reveals the chromosome-scale genomic architecture of the nematode model organism Pristionchus pacificus. Cell Rep 21: 834–844. ↵Rogers RL, Shao L, Thornton KR. 2017. Tandem duplications lead to novel expression patterns through exon shuffling...
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  3. Research: Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation
    • Michael S. Werner,
    • Bogdan Sieriebriennikov,
    • Neel Prabh,
    • Tobias Loschko,
    • Christa Lanz,
    • and Ralf J. Sommer
    Genome Res. November 2018 28: 1675-1687; Published in Advance September 19, 2018, doi:10.1101/gr.234872.118
    ...window Figure 3. The epi of Pristionchus pacificus. (A) Chromatin states determined through a hidden Markov model (ChromHMM) clustered by histone modifications and ATAC-seq, normalized by coverage. Darker blue represents greater enrichment. (B) Candidate annotation of each chromatin state according...
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  4. Letter: Repertoire and evolution of miRNA genes in four divergent nematode species
    • Elzo de Wit,
    • Sam E.V. Linsen,
    • Edwin Cuppen,
    • and Eugene Berezikov
    Genome Res. November 2009 19: 2064-2074; Published in Advance September 15, 2009, doi:10.1101/gr.093781.109
    ...-transcriptional regulation. We have performed small RNA sequencing in the nematodes Caenorhabditis elegans , C. briggsae , C. remanei , and Pristionchus pacificus , which have diverged up to 400 million years ago, to establish the repertoire and evolutionary dynamics of miRNAs in these species. In addition to previously...
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