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Research: Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites
- João L. Reis-Cunha,
- Samuel A. Pimenta-Carvalho,
- Laila V. Almeida,
- Anderson Coqueiro-dos-Santos,
- Catarina A. Marques,
- Jennifer A. Black,
- Jeziel Damasceno,
- Richard McCulloch,
- Daniella C. Bartholomeu,
- and Daniel C. Jeffares
Genome Res. March 2024 34: 441-453; Published in Advance April 11, 2024, doi:10.1101/gr.278550.123
...; (F) Paratrypanosoma; (G) Porcisia; (H) Trypanosoma cruzi; (I) Trypanosoma brucei; (J) Trypanosoma congolense; (K) Trypanosoma vivax. Larger versions of these plots can be seen in the Supplemental Figure S4.TASC has a peculiar gene structure, an increased nucleotide diversity, and minor allele...
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LETTER: A Random Sequencing Approach for the Analysis of the Trypanosoma cruzi Genome: General Structure, Large Gene and Repetitive DNA Families, and Gene Discovery
- Fernán Agüero,
- Ramiro E. Verdún,
- Alberto Carlos C. Frasch,
- and Daniel O. Sánchez
Genome Res. December 1, 2000 10: 1996-2005; Published in Advance November 21, 2000, doi:10.1101/gr.146300
...of the pathogenic protozoan Trypanosome cruzi. Genome Res. 10 : 1103 – 1107 . ↵ Puerta C. , Martin J. , Alonso C. , Lopez M.C. ( 1994 ) Isolation and characterization of the gene encoding histone H2A from Trypanosoma cruzi. Mol. Biochem. Parasitol. 64 : 1 – 10 . ↵ Regev A. , Lamb M.J. , Jablonka E. ( 1998...
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Method: High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome
- Sam Alsford,
- Daniel J. Turner,
- Samson O. Obado,
- Alejandro Sanchez-Flores,
- Lucy Glover,
- Matthew Berriman,
- Christiane Hertz-Fowler,
- and David Horn
Genome Res. June 2011 21: 915-924; Published in Advance March 1, 2011, doi:10.1101/gr.115089.110
..., Stringer JR. 2009. Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens. Nat Rev Microbiol 7: 493–503. El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E,Worthey EA, Delcher AL, Blandin G, et al. 2005a. The sequence of Trypanosoma cruzi...
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LETTER: Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length
- Sergio Callejas,
- Vanessa Leech,
- Christopher Reitter,
- and Sara Melville
Genome Res. September 2006 16: 1109-1118; Published in Advance August 9, 2006, doi:10.1101/gr.5147406
...(a similar case is reported in T. cruzi ; Tomas and Kelly 1996 ). The function of this gene family is unclear, but this array is duplicated in Tbg-M and expanded 1.5 times in Tb427. However, in the three test s the last ORF is missing or very divergent, indicating it is more variable between isolates...
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LETTER: Annotated Expressed Sequence Tags and cDNA Microarrays for Studies of Brain and Behavior in the Honey Bee
- Charles W. Whitfield,
- Mark R. Band,
- Maria F. Bonaldo,
- Charu G. Kumar,
- Lei Liu,
- Jose R. Pardinas,
- Hugh M. Robertson,
- M. Bento Soares,
- and Gene E. Robinson
Genome Res. April 1, 2002 12: 555-566; doi:10.1101/gr.5302
.... Robertson 1 , M. Bento Soares 2 , and Gene E. Robinson 1 , 4 1Department of Entomology and Neuroscience Program, University of Illinois, Urbana, Illinois 61801, USA;2Departments of Pediatrics and Biochemistry, University of Iowa, Iowa City, Iowa 52242, USA; 3W...
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Research: Reevaluation of the Toxoplasma gondii and Neospora caninum genomes reveals misassembly, karyotype differences, and chromosomal rearrangements
- Luisa Berná,
- Pablo Marquez,
- Andrés Cabrera,
- Gonzalo Greif,
- María E. Francia,
- and Carlos Robello
Genome Res. May 2021 31: 823-833; Published in Advance April 27, 2021, doi:10.1101/gr.262832.120
...significantly improves assembly of the protozoan parasite Trypanosoma cruzi. Genome Biol Evol 11: 1952–1957. doi:10.1093/gbe/evz129 ↵Dubey JP. 2003. Review of Neospora caninum and neosporosis in animals. Korean J Parasitol 41: 1–16. doi:10.3347/kjp.2003.41.1.1 ↵Dubey JP, Barr BC, Barta JR, Bjerkås I, Björkman C...
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Research: Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance
- Tim Downing,
- Hideo Imamura,
- Saskia Decuypere,
- Taane G. Clark,
- Graham H. Coombs,
- James A. Cotton,
- James D. Hilley,
- Simonne de Doncker,
- Ilse Maes,
- Jeremy C. Mottram,
- Mike A. Quail,
- Suman Rijal,
- Mandy Sanders,
- Gabriele Schönian,
- Olivia Stark,
- Shyam Sundar,
- Manu Vanaerschot,
- Christiane Hertz-Fowler,
- Jean-Claude Dujardin,
- and Matthew Berriman
Genome Res. December 2011 21: 2143-2156; Published in Advance October 28, 2011, doi:10.1101/gr.123430.111
..., followed by erosion as proposed in Trypanosoma cruzi (Lewis et al. 2009). Besides aneuploidy, two other features of Leishmania plasticity contributed to gene-dosage differences on a finer scale. The first was the expansion and contraction of genes in tandem arrays. These are expressed through polycistronic...
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LETTER: Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite
- Yimin Wu,
- Xiangyun Wang,
- Xia Liu,
- and Yufeng Wang
Genome Res. April 1, 2003 13: 601-616; doi:10.1101/gr.913403
...to be central mediators for essential parasitic activity and distantly related to the vertebrate host. Moreover, of the 92, at least 88 have been demonstrated to code for gene products at the transcriptional levels, based upon the microarray and RT-PCR results, and the publicly available microarray...

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