Searching journal content for articles similar to Popadin et al. 28 (1): 1.

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  1. Method: Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning
    • Zeynep Kalender Atak,
    • Ibrahim Ihsan Taskiran,
    • Jonas Demeulemeester,
    • Christopher Flerin,
    • David Mauduit,
    • Liesbeth Minnoye,
    • Gert Hulselmans,
    • Valerie Christiaens,
    • Ghanem-Elias Ghanem,
    • Jasper Wouters,
    • and Stein Aerts
    Genome Res. June 2021 31: 1082-1096; Published in Advance April 8, 2021, doi:10.1101/gr.260851.120
    ...crucial genes and pathways are underpinning the fitness advantages of cancer cells. Such mutations may be found by recurrence analysis across patients and even across cancer types, at least in the coding fraction of the (Bailey et al. 2018). In the noncoding , however, this approach typically breaks down...
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  2. Research: Trans-splicing enhances translational efficiency in C. elegans
    • Yu-Fei Yang,
    • Xiaoqing Zhang,
    • Xuehua Ma,
    • Taolan Zhao,
    • Qiushi Sun,
    • Qing Huan,
    • Shaohuan Wu,
    • Zhuo Du,
    • and Wenfeng Qian
    Genome Res. September 2017 27: 1525-1535; Published in Advance July 6, 2017, doi:10.1101/gr.202150.115
    ...′ UTR secondary structure to enhance translational efficiency Stable secondary structures in the 5′ terminus of an mRNA can slow down ribosome scanning or translocation at the initiation step and thus reduce translational efficiency (Sen et al. 2015). Therefore, we hypothesized that SL1 transsplicing...
  3. Perspective: Evolution under canalization and the dual roles of microRNAs—A hypothesis
    • Chung-I Wu,
    • Yang Shen,
    • and Tian Tang
    Genome Res. May 2009 19: 734-743; doi:10.1101/gr.084640.108
    ...–24 nucleotides (nt) long (Lee et al. 1993; Wightman et al. 1993; Lagos-Quintana et al. 2001; Lau et al. 2001; Lee and Ambros 2001). They normally guide the so-called RNA-induced silencing protein (RISC) complex to down-regulate transcripts that contain miR-matching sequences in their 39 UTRs. The rules...
  4. Research: Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation
    • Jonathan Neve,
    • Kaspar Burger,
    • Wencheng Li,
    • Mainul Hoque,
    • Radhika Patel,
    • Bin Tian,
    • Monika Gullerova,
    • and Andre Furger
    Genome Res. January 2016 26: 24-35; Published in Advance November 6, 2015, doi:10.1101/gr.193995.115
    ...that DICER1 and EHMT2 contribute to shaping the chromatin landscape surrounding the proximal CPA site in ETNK1, forcing RNA polymerase to slow down, which in turn may favor proximal PAS recognition. How far reaching this process is remains to be explored. Discussion Our comparison between cytoplasmic...
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