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  1. Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
    • Shahmir Naseer,
    • Thomas C Clark,
    • Bertrand Collet,
    • Pooran Dewari,
    • Damir Baranasic,
    • Daniel J Macqueen,
    • Pierre Boudinot,
    • and Samuel A.M. Martin
    Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
    ...provides novel insights into the genomic regulatory landscape underlying antiviral 33 immunity in a farmed fish with a complex . 34 Introduction 35 The innate immune response to viral infection, which is mainly based on the type I interferon 36 (type I IFN) pathway is crucial to both disease progression...
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  2. ARTICLE: The Family of Caenorhabditis elegans Tyrosine Kinase Receptors: Similarities and Differences with Mammalian Receptors
    • Cornel Popovici,
    • Régine Roubin,
    • François Coulier,
    • Pierre Pontarotti,
    • and Daniel Birnbaum
    Genome Res. November 1, 1999 9: 1026-1039; doi:10.1101/gr.9.11.1026
    ...Régine Birnbaum, D Birnbaum, Daniel Daniel C Popovici Popovici 1549-5469 10.1101/gr.9.11.1026 1088-9051 genome;9/11/1026 The Family of Caenorhabditis elegans Tyrosine Kinase Receptors: Similarities and Differences with Mammalian Receptors The Family of Caenorhabditis elegans Tyrosine Kinase Receptors...
  3. Research: Genetic and environmental exposures constrain epigenetic drift over the human life course
    • Sonia Shah,
    • Allan F. McRae,
    • Riccardo E. Marioni,
    • Sarah E. Harris,
    • Jude Gibson,
    • Anjali K. Henders,
    • Paul Redmond,
    • Simon R. Cox,
    • Alison Pattie,
    • Janie Corley,
    • Lee Murphy,
    • Nicholas G. Martin,
    • Grant W. Montgomery,
    • John M. Starr,
    • Naomi R. Wray,
    • Ian J. Deary,
    • and Peter M. Visscher
    Genome Res. November 2014 24: 1725-1733; Published in Advance September 23, 2014, doi:10.1101/gr.176933.114
    ...of the discoidin domain receptor tyrosine kinase 1 (DDR1) gene, which based on mice studies, plays an essential role in mammary gland development (Vogel et al. 2001). Discussion Although observations of changes in global (or average) methylation over time have been previously reported (Fraga et al. 2005; Bjornsson...
  4. Research: A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells
    • Michael R. Tallack,
    • Tom Whitington,
    • Wai Shan Yuen,
    • Elanor N. Wainwright,
    • Janelle R. Keys,
    • Brooke B. Gardiner,
    • Ehsan Nourbakhsh,
    • Nicole Cloonan,
    • Sean M. Grimmond,
    • Timothy L. Bailey,
    • and Andrew C. Perkins
    Genome Res. August 2010 20: 1052-1063; Published in Advance May 27, 2010, doi:10.1101/gr.106575.110
    ...years that surface expression of the transferrin receptor (Tfrc, CD71) on erythroid cells is reduced in the absence of Klf1 in a gene dosage-dependent manner, suggesting it might be a direct target of KLF1 (Hodge et al. Table 1. Highest ranking KLF1 ChIP-seq peaks Peak height Genomic location (mm9...
  5. LETTER: Coexpression Analysis of Human Genes Across Many Microarray Data Sets
    • Homin K. Lee,
    • Amy K. Hsu,
    • Jon Sajdak,
    • Jie Qin,
    • and Paul Pavlidis
    Genome Res. June 2004 14: 1085-1094; doi:10.1101/gr.1910904
    ...Coexpression Analysis of Human Genes Across Many Microarray Data Sets Homin K. Lee 1 , Amy K. Hsu 1 , 2 , Jon Sajdak 1 , Jie Qin 1 , and Paul Pavlidis 1 , 3 , 4 1 Columbia Genome Center, Columbia University, New York...
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