Searching journal content for articles similar to Piegu et al. 16 (10): 1262.

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  1. LETTER: Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
    • Thomas Wicker and
    • Beat Keller
    Genome Res. July 2007 17: 1072-1081; Published in Advance June 7, 2007, doi:10.1101/gr.6214107
    ...family becomes active. Such bursts of activity can cause a rapid expansion, as was shown in barley ( Kalendar et al. 2000 ) and Oryza australiensis , a wild relative of rice ( Piegu et al. 2006 ). Many retrotransposons are nonautonomous elements that rely for their replication completely or in part...
  2. LETTER: Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
    • Regina S. Baucom,
    • James C. Estill,
    • Jim Leebens-Mack,
    • and Jeffrey L. Bennetzen
    Genome Res. February 2009 19: 243-254; Published in Advance November 24, 2008, doi:10.1101/gr.083360.108
    ...genomic modification and reorganization, the evolutionary dynamics that affect their frequency in host s are poorly understood. We analyzed patterns of genetic variation among LTR retrotransposons from Oryza sativa to investigate the type of selective forces that potentially limit their amplification...
  3. Letter: Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
    • Zhixi Tian,
    • Carene Rizzon,
    • Jianchang Du,
    • Liucun Zhu,
    • Jeffrey L. Bennetzen,
    • Scott A. Jackson,
    • Brandon S. Gaut,
    • and Jianxin Ma
    Genome Res. December 2009 19: 2221-2230; Published in Advance September 29, 2009, doi:10.1101/gr.083899.108
    .... 2001; Bruggmann et al. 2006). A particularly striking study shows that Oryza australiensis, a wild species of rice, has accumulated more than 90,000 copies of LTR-RTs during the last three million years, leading to a twofold increase in size without polyploidization (Piegu et al. 2006). To counteract...
  4. Research: Reactivation of transposable elements following hybridization in fission yeast
    • Sergio Tusso,
    • Fang Suo,
    • Yue Liang,
    • Li-Lin Du,
    • and Jochen B.W. Wolf
    Genome Res. February 2022 32: 324-336; Published in Advance December 14, 2021, doi:10.1101/gr.276056.121
    ...ancestors. Detailed phylogenetic and population genetic analyses were used to shed light on TE selection dynamics, assess the evidence of complex recombination, and test the genomic shock hypothesis.ResultsA previous large-scale analysis of global genetic diversity of S. pombe using 161 strains identified...
  5. Letter: Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • Jesse D. Hollister and
    • Brandon S. Gaut
    Genome Res. August 2009 19: 1419-1428; Published in Advance May 28, 2009, doi:10.1101/gr.091678.109
    ..., and a relative of rice have at least doubled in size within the last;5million yr (Myr) due to the proliferation of TEs (SanMiguel et al. 1998; Hawkins et al. 2006; Piegu et al. 2006). Presumably host defenses against TEs counteract expansion, and three distinct mechanisms have been proposed to limit TE copy...
  6. Research: Widespread and frequent horizontal transfers of transposable elements in plants
    • Moaine El Baidouri,
    • Marie-Christine Carpentier,
    • Richard Cooke,
    • Dongying Gao,
    • Eric Lasserre,
    • Christel Llauro,
    • Marie Mirouze,
    • Nathalie Picault,
    • Scott A. Jackson,
    • and Olivier Panaud
    Genome Res. May 2014 24: 831-838; Published in Advance February 11, 2014, doi:10.1101/gr.164400.113
    ...polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16: 1262–1269. Prak ET, KazazianHH Jr. 2000.Mobile elements and the human .Nat Rev Genet 1: 134–144. Rebollo R, Romanish MT, Mager DL. 2012. Transposable elements: an abundant...
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  7. Erratum: Erratum Genome Res. July 2011 21: 1201
    ...genome;21/7/1201 1088-9051 Erratum Erratum Genome Research 16: 1262–1269 (2006) Doubling size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice Benoit Piegu, Romain Guyot, Nathalie Picault, Anne Roulin, Abhijit...
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