Searching journal content for articles similar to Picoult-Newberg et al. 9 (2): 167.

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Methods: Survey of allelic expression using EST mining
- Bing Ge,
- Scott Gurd,
- Tiffany Gaudin,
- Carole Dore,
- Pierre Lepage,
- Eef Harmsen,
- Thomas J. Hudson,
- and Tomi Pastinen
Genome Res. November 2005 15: 1584-1591; doi:10.1101/gr.4023805
...transcripts that exists is in dbEST and contains 4,636,789 sequence traces (build #173) in UniGene clusters. Along with EST-based gene identification ( Adams et al. 1992 ; for review, see Mathe et al. 2002 ), this database has found uses in identifying single nucleotide polymorphisms (SNPs) ( Buetow et al...
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RESOURCE: GBuilder—An Application for the Visualization and Integration of EST Cluster Data
- Juha Muilu,
- Patricia Rodriguez-Tomé,
- and Alan Robinson
Genome Res. January 1, 2001 11: 179-184; doi:10.1101/gr.157501
...-Jacino M. ( 1999 ) Mining SNPs from EST databases. Genome Res. 9 : 167 – 174 . ↵ Rodriguez-Tome P. , Lijnzaad P. ( 2000 ) RHdb: The radiation hybrid database. Nucleic Acids Res. 28 : 146 – 147 . ↵ Schmitt A.O. , Specht T. , Beckmann G. , Dahl E. , Pilarsky C.P. , Hinzmann B. , Rosenthal A. ( 1999...
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Research: Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements
- Luis E. Valentin-Alvarado,
- Ling-Dong Shi,
- Kathryn E. Appler,
- Alexander Crits-Christoph,
- Valerie De Anda,
- Benjamin A. Adler,
- Michael L. Cui,
- Lynn Ly,
- Pedro Leão,
- Richard J. Roberts,
- Rohan Sachdeva,
- Brett J. Baker,
- David F. Savage,
- and Jillian F. Banfield
Genome Res. October 2024 34: 1595-1609; Published in Advance October 15, 2024, doi:10.1101/gr.279480.124
...single-nucleotide polymorphisms (SNPs) relative to the reference sequence and thus do not represent the sequence itself.View larger version: In this window In a new window Figure 2. Chromosomally integrated MGEs and defense systems in soil Asgard Archaea s. Each panel (A–C) depicts the coverage across...
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LETTER: Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite
- Yimin Wu,
- Xiangyun Wang,
- Xia Liu,
- and Yufeng Wang
Genome Res. April 1, 2003 13: 601-616; doi:10.1101/gr.913403
...Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite Yimin Wu 1 , 4 , Xiangyun Wang 2 , Xia Liu 1 , and Yufeng Wang 3 , 5 1Department of Protistology, American Type Culture Collection, Manassas...
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Resource: The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- Tal J. Shalev,
- Omnia Gamal El-Dien,
- Macaire M.S. Yuen,
- Shu Shengqiang,
- Shaun D. Jackman,
- René L. Warren,
- Lauren Coombe,
- Lise van der Merwe,
- Ada Stewart,
- Lori B. Boston,
- Christopher Plott,
- Jerry Jenkins,
- Guifen He,
- Juying Yan,
- Mi Yan,
- Jie Guo,
- Jesse W. Breinholt,
- Leandro G. Neves,
- Jane Grimwood,
- Loren H. Rieseberg,
- Jeremy Schmutz,
- Inanc Birol,
- Matias Kirst,
- Alvin D. Yanchuk,
- Carol Ritland,
- John H. Russell,
- and Joerg Bohlmann
Genome Res. October 2022 32: 1952-1964; Published in Advance September 15, 2022, doi:10.1101/gr.276358.121
...-Interior (n = 9) (Fig. 1A). Using a panel of single-nucleotide polymorphisms (SNPs) that were genotyped via targeted sequence capture approach, we identified 2,454,925 variant and invariant sites, which were filtered separately and resulted in sets of 18,371 SNPs (Supplemental Data Set S5) and 2...
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RESOURCE: A SNP Resource for Human Chromosome 22: Extracting Dense Clusters of SNPs From the Genomic Sequence
- Elisabeth Dawson,
- Yuan Chen,
- Sarah Hunt,
- Luc J. Smink,
- Adrienne Hunt,
- Kate Rice,
- Simon Livingston,
- Suzannah Bumpstead,
- Richard Bruskiewich,
- Pak Sham,
- Rocky Ganske,
- Mark Adams,
- Kazuhiko Kawasaki,
- Nobuyoshi Shimizu,
- Shinsei Minoshima,
- Bruce Roe,
- David Bentley,
- and Ian Dunham
Genome Res. January 1, 2001 11: 170-178; doi:10.1101/gr.156901
...-Jacino M. ( 1999 ) Mining SNPs from EST databases. Genome Res. 9 : 167 – 174 . ↵ Risch N. , Merikangas K. ( 1996 ) The future of genetic studies of complex human diseases. Science 273 : 1516 – 1517 . ↵ Ryan D. , Nuccie B. , Arvan D. ( 1999 ) Non-PCR-dependent detection of the factor V Leiden mutation from...
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Research: Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
- Fan Zhang,
- Hongzhang Xue,
- Xiaorui Dong,
- Min Li,
- Xiaoming Zheng,
- Zhikang Li,
- Jianlong Xu,
- Wensheng Wang,
- and Chaochun Wei
Genome Res. May 2022 32: 853-863; Published in Advance April 8, 2022, doi:10.1101/gr.276015.121
...rice pan-s using cd-hit-est-2d and cd-hit-2d in CD-HIT v4.8.1.Detection of PAV-phenotype associationsThe phenotypic data for agronomic traits of the 105 OS accessions were downloaded from the RFGB (http://www.rmbreeding.cn/phenotype) (Wang et al. 2020) and Rice SNP-Seek Database (https://snp...
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Research: SWATH-MS-based proteogenomic analysis reveals the involvement of alternative splicing in poplar upon lead stress
- Fu-Yuan Zhu,
- Xin Chen,
- Yu-Chen Song,
- Lydia Pui Ying Lam,
- Yuki Tobimatsu,
- Bei Gao,
- Mo-Xian Chen,
- and Fu-Liang Cao
Genome Res. March 2023 33: 371-385; Published in Advance March 24, 2023, doi:10.1101/gr.277473.122
...tolerance in diverse plant species. Our findings offer new molecular targets and bioengineering strategies for phytoremediation and provide new insight for future directions in AS research.Rapid industrialization, urbanization, intensive agriculture, and mining have caused widespread contamination of soil...
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Resource: Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
- Chuna Kim,
- Jun Kim,
- Sunghyun Kim,
- Daniel E. Cook,
- Kathryn S. Evans,
- Erik C. Andersen,
- and Junho Lee
Genome Res. June 2019 29: 1023-1035; Published in Advance May 23, 2019, doi:10.1101/gr.246082.118
...; Supplemental Figs. S1C–E, S2A,B,E–G; Supplemental Table S1). The final assembled of CB4856 was 103 Mb in total, 99.4% identical to the N2 , and contained 0.2% SNPs between N2 and CB4856 (Tables 1, 2). BUSCO analysis based on gene content information showed that the completeness of the CB4856 was comparable...
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Method: Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants
- Dongqing Shi,
- Jun Wu,
- Haibao Tang,
- Hao Yin,
- Hongtao Wang,
- Ran Wang,
- Runze Wang,
- Ming Qian,
- Juyou Wu,
- Kaijie Qi,
- Zhihua Xie,
- Zhiwen Wang,
- Xiang Zhao,
- and Shaoling Zhang
Genome Res. November 2019 29: 1889-1899; Published in Advance October 24, 2019, doi:10.1101/gr.251033.119
...is correlated with variation in flowering time (Skøt et al. 2011). Furthermore, allelic MYB transcription factors in fruit trees have been shown to differentially control anthocyanin biosynthesis and fruit color (Lin-Wang et al. 2010; Zhu et al. 2011). Accurately haplotype-based allele mining is a prerequisite...
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