Searching journal content for articles similar to Peterson et al. 9 (12): 1250.

Displaying results 1-10 of 311

For checked items

view abstracts
download to citation manager

Select this article
Resource: A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci
- Kaitlin U. Laverty,
- Jake M. Stout,
- Mitchell J. Sullivan,
- Hardik Shah,
- Navdeep Gill,
- Larry Holbrook,
- Gintaras Deikus,
- Robert Sebra,
- Timothy R. Hughes,
- Jonathan E. Page,
- and Harm van Bakel
Genome Res. January 2019 29: 146-156; Published in Advance November 8, 2018, doi:10.1101/gr.242594.118
...chromosome, one end of which is nonhomologous and thus nonrecombining, and Chromosomes 8 and 9 (as determined by cytogenetics) (Divashuk et al. 2014), which harbor 5S rDNA and 45S rDNA on one arm, respectively. The repetitive nature of these regions would be expected to impede both assembly and mapping...
OPEN ACCESS ARTICLE
Select this article
Research: Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
- Cyril Matthey-Doret,
- Morgan J. Colp,
- Pedro Escoll,
- Agnès Thierry,
- Pierrick Moreau,
- Bruce Curtis,
- Tobias Sahr,
- Matt Sarrasin,
- Michael W. Gray,
- B. Franz Lang,
- John M. Archibald,
- Carmen Buchrieser,
- and Romain Koszul
Genome Res. September 2022 32: 1698-1710; Published in Advance September 15, 2022, doi:10.1101/gr.276375.121
...-C contact maps have been published from species of Amoebozoa. Although a Hi-C library was generated on Entamoeba histolytica for the purpose of scaffolding (Kawano-Sugaya et al. 2020), its quality was too poor to yield a contact map of good quality. Here, the Hi-C reads we used to generate the chromosome...
Select this article
Research: Genomic architecture constrained placental mammal X Chromosome evolution
- Wesley A. Brashear,
- Kevin R. Bredemeyer,
- and William J. Murphy
Genome Res. August 2021 31: 1353-1365; Published in Advance July 22, 2021, doi:10.1101/gr.275274.121
...of targeted BAC clone sequence) to the pig, human, and mouse assemblies. A comprehensive analysis of annotated X-linked orthologs in public databases demonstrated that the majority of ampliconic gene families were present on the ancestral placental X Chromosome. We generated a domestic cat Hi-C contact map...
Select this article
Research: Sir3 mediates long-range chromosome interactions in budding yeast
- Myriam Ruault,
- Vittore F. Scolari,
- Luciana Lazar-Stefanita,
- Antoine Hocher,
- Isabelle Loïodice,
- Romain Koszul,
- and Angela Taddei
Genome Res. March 2021 31: 411-425; Published in Advance February 12, 2021, doi:10.1101/gr.267872.120
...to the chromatin polymeric backbone. This co-alignment of chromosome arms is also visible in the cumulated inter-chromosome contact maps of the 100-kb subtelomeric regions and is very similar to the one observed in pericentromeric regions in G2/M phase (Supplemental Fig. S1B; Schalbetter et al. 2017). In wild...
Select this article
Method: Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay
- Jennifer Hammelman,
- Konstantin Krismer,
- Budhaditya Banerjee,
- David K. Gifford,
- and Richard I. Sherwood
Genome Res. October 2020 30: 1468-1480; Published in Advance September 24, 2020, doi:10.1101/gr.263228.120
.... Multiplexed integrated accessibility assay (MIAA) measures local DNA accessibility of synthesized oligonucleotide DNA sequence libraries. (A) The MIAA library sequence construct contains a variable DNA sequence, homology arms for CRISPR-mediated HDR integration at a specific genomic locus that includes...
OPEN ACCESS ARTICLE
Select this article
Research: Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation
- Andrew J. Tock,
- Daniel M. Holland,
- Wei Jiang,
- Kim Osman,
- Eugenio Sanchez-Moran,
- James D. Higgins,
- Keith J. Edwards,
- Cristobal Uauy,
- F. Chris H. Franklin,
- and Ian R. Henderson
Genome Res. September 2021 31: 1614-1628; Published in Advance August 23, 2021, doi:10.1101/gr.273672.120
...- bisulfite sequencing maps of DNA methylation (Guo et al. 2016; IWGSC 2018; Li et al. 2019; Supplemental Table S1).At the chromosome scale, we observed a strong positive correlation between DMC1 and ASY1 ChIP-seq signals (log2[ChIP/input]) in adjacent 1-Mb windows (-wide Spearman's rs = 0.97), with co...
Select this article
Research: The house fly Y Chromosome is young and minimally differentiated from its ancient X Chromosome partner
- Richard P. Meisel,
- Christopher A. Gonzales,
- and Hoang Luu
Genome Res. August 2017 27: 1417-1426; Published in Advance June 15, 2017, doi:10.1101/gr.215509.116
...of the gene encoding the spliceosome-associated protein CWC22 (Sharma et al. 2017), not an ancient gene as would be expected if it were the ancestral male-determining locus of brachycerans. Mdmd has been mapped to the autosomes as well as the Y Chromosome (Sharma et al. 2017), suggesting that the house fly Y...
Select this article
Resource: Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562
- Bo Zhou,
- Steve S. Ho,
- Stephanie U. Greer,
- Xiaowei Zhu,
- John M. Bell,
- Joseph G. Arthur,
- Noah Spies,
- Xianglong Zhang,
- Seunggyu Byeon,
- Reenal Pattni,
- Noa Ben-Efraim,
- Michael S. Haney,
- Rajini R. Haraksingh,
- Giltae Song,
- Hanlee P. Ji,
- Dimitri Perrin,
- Wing H. Wong,
- Alexej Abyzov,
- and Alexander E. Urban
Genome Res. March 2019 29: 472-484; Published in Advance February 8, 2019, doi:10.1101/gr.234948.118
...and understanding of the vast troves of existing functional genomics and epigenomics data for K562. We performed and integrated deep-coverage whole- (short-insert), mate-pair, and linked-read sequencing as well as karyotyping and array CGH analysis to identify a wide spectrum of characteristics in K562: copy...
Select this article
Research: Integrated single-cell genetic and transcriptional analysis suggests novel drivers of chronic lymphocytic leukemia
- Lili Wang,
- Jean Fan,
- Joshua M. Francis,
- George Georghiou,
- Sarah Hergert,
- Shuqiang Li,
- Rutendo Gambe,
- Chensheng W. Zhou,
- Chunxiao Yang,
- Sheng Xiao,
- Paola Dal Cin,
- Michaela Bowden,
- Dylan Kotliar,
- Sachet A. Shukla,
- Jennifer R. Brown,
- Donna Neuberg,
- Dario R. Alessi,
- Cheng-Zhong Zhang,
- Peter V. Kharchenko,
- Kenneth J. Livak,
- and Catherine J. Wu
Genome Res. August 2017 27: 1300-1311; Published in Advance July 5, 2017, doi:10.1101/gr.217331.116
...et al. 2014; Tirosh et al. 2016a). These studies identified single cells with large chromosomal arm–level alterations and detected aberrant expression of cellular pathways impacted by genes within these deleted regions (Patel et al. 2014; Tirosh et al. 2016a). It has not been clear, however, whether...
Select this article
LETTER: A Fine Physical Map of the Rice Chromosome 4
- Qiang Zhao,
- Yu Zhang,
- Zhukuan Cheng,
- Mingsheng Chen,
- Shengyue Wang,
- Qi Feng,
- Yucheng Huang,
- Ying Li,
- Yesheng Tang,
- Bo Zhou,
- Zhehua Chen,
- Shuliang Yu,
- Jingjie Zhu,
- Xin Hu,
- Jie Mu,
- Kai Ying,
- Pei Hao,
- Lei Zhang,
- Yiqi Lu,
- Lei S. Zhang,
- Yilei Liu,
- Zhen Yu,
- Danlin Fan,
- Qijun Weng,
- Ling Chen,
- Tingting Lu,
- Xiaohui Liu,
- Peixin Jia,
- Tongguo Sun,
- Yongrui Wu,
- Yujun Zhang,
- Ying Lu,
- Can Li,
- Rong Wang,
- Haiyan Lei,
- Tao Li,
- Hao Hu,
- Mei Wu,
- Runquan Zhang,
- Jianping Guan,
- Jia Zhu,
- Gang Fu,
- Minghong Gu,
- Guofan Hong,
- Yongbiao Xue,
- Rod Wing,
- Jiming Jiang,
- and Bin Han
Genome Res. May 1, 2002 12: 817-823; doi:10.1101/gr.48902
...to telomeres, as well as to the centromere position, were determined by BAC-pachytene chromosome fluorescence in situ hybridization (FISH). This gave rise to an estimated length ratio of 5.13 for the long arm and 2.9 for the short arm (on the basis of the physical map), which indicates that the short arm...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Peterson et al. 9 (12): 1250.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: