Searching journal content for articles similar to Peterson 12 (2): 217.

Displaying results 1-10 of 57
For checked items
  1. Method: Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
    • Sara Castagnola,
    • Julie Cazareth,
    • Kevin Lebrigand,
    • Marielle Jarjat,
    • Virginie Magnone,
    • Sébastien Delhaye,
    • Frederic Brau,
    • Barbara Bardoni,
    • and Thomas Maurin
    Genome Res. November 2020 30: 1633-1642; Published in Advance September 24, 2020, doi:10.1101/gr.262717.120
    ...brain, a highly heterogeneous tissue, enriching it in interneurons by stimulation with KCl or with AMPA, an agonist of the glutamate receptors, followed by sorting based on calcium levels. After AMPA stimulus, single-cell transcriptomics of these aiFACS-selected interneurons resulted in a nine...
  2. Method: Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies
    • Jianing Yao,
    • Jinglun Yu,
    • Brian Caffo,
    • Stephanie C. Page,
    • Keri Martinowich,
    • and Stephanie C. Hicks
    Genome Res. July 2025 35: 1621-1632; Published in Advance May 20, 2025, doi:10.1101/gr.279380.124
    ...and reduce noise, we established a threshold of six standard deviations above the mean pixel values and applied a max filter with a 10 × 10 image box to facilitate the detection of protein-rich regions by Proust.DLPFC Visium SPGThe human DLFPC brain tissue was measured on the 10x Genomics Visium SPG platform...
    OPEN ACCESS ARTICLE
  3. Method: Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase
    • Maria Grazia Mendoza-Ferri,
    • Gwendoline Lozachmeur,
    • Maximilien Duvina,
    • Laetitia Perret,
    • Didier Merciris,
    • Anne Gigout,
    • and Marco Antonio Mendoza-Parra
    Genome Res. July 2025 35: 1633-1645; Published in Advance May 13, 2025, doi:10.1101/gr.280305.124
    ...spatial epigenomic element (SpExel), in analogy to picture elements (pixels). (G) Digital display corresponding to the number of adjusted read counts associated to the physical positions in the mouse brain section (heatmap displayed in logarithmic scale). (H) Venn diagram displaying the number...
    OPEN ACCESS ARTICLE
  4. Method: A novel multislice framework for precision 3D spatial domain reconstruction and disease pathology analysis
    • Daijun Zhang,
    • Ren Qi,
    • Xun Lan,
    • and Bin Liu
    Genome Res. August 2025 35: 1794-1808; Published in Advance July 14, 2025, doi:10.1101/gr.280281.124
    ...but lack SC resolution owing to spot-level sequencing. Advanced technologies like Stereo-seq (Chen et al. 2022), Visium HD (Nagendran et al. 2023), Pixel-seq (Fu et al. 2022), and Seq-Scope (Cho et al. 2021) can achieve subcellular resolution and potentially enable SC analysis through cell segmentation...
  5. Method: Chromosome engineering to correct a complex rearrangement on Chromosome 8 reveals the effects of 8p syndrome on gene expression and neural differentiation
    • Sophia N. Lee,
    • Erin C. Banda,
    • Lu Qiao,
    • Sarah L. Thompson,
    • Karan Singh,
    • Ryan A. Hagenson,
    • Teresa Davoli,
    • Stefan F. Pinter,
    • and Jason M. Sheltzer
    Genome Res. March 2026 36: 547-560; Published in Advance January 12, 2026, doi:10.1101/gr.280425.125
    ...were changed every day until D18. At D18, cultures were enzymatically passaged with Accutase (EMD Millipore SCR005) onto poly-D lysine and laminin-coated substrates at 2.1 × 104 cells/cm2 into ND media: neurobasal media, B27, GlutaMAX, NEAA, penicillin–streptomycin supplemented with brain...
  6. Method: Integration of hyperspectral imaging and transcriptomics from individual cells with SpectralSeq
    • Yike Xie,
    • Abbas Habibalahi,
    • Ayad G. Anwer,
    • Kanu Wahi,
    • Jacqueline Bailey,
    • Francis Lin,
    • Catherine Gatt,
    • Emma M.V. Johansson,
    • Tatyana Chtanova,
    • Jeff Holst,
    • Ewa Goldys,
    • and Fabio Zanini
    Genome Res. August 2025 35: 1809-1820; Published in Advance July 8, 2025, doi:10.1101/gr.280014.124
    ...pixels within the segmentation mask were averaged. (D) Total reads per cell versus percentage of mitochondrial over total reads for experimental batch 1, with the same cell as in B highlighted as a red star. (E) As in D but for experimental batch 2. (F) Hyperspectral PCA for both batches combined...
    OPEN ACCESS ARTICLE
  7. Method: Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
    • Hongyu Zheng,
    • Hirak Sarkar,
    • and Benjamin J. Raphael
    Genome Res. December 2025 35: 2734-2743; Published in Advance November 17, 2025, doi:10.1101/gr.280555.125
    OPEN ACCESS ARTICLE
  8. Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
    • Andrew D. Bates,
    • Dawid Grzela,
    • Maciej Studzian,
    • Louise Brennan,
    • Moli Williams,
    • Conor Fawcett,
    • Beth Hammond,
    • Manreen Grewal,
    • Marcin Ratajewski,
    • Lukasz Pulaski,
    • and Urszula L. McClurg
    Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
    OPEN ACCESS ARTICLE
  9. ARTICLE: Multiplex Three-Dimensional Brain Gene Expression Mapping in a Mouse Model of Parkinson's Disease
    • Vanessa M. Brown,
    • Alex Ossadtchi,
    • Arshad H. Khan,
    • Simon Yee,
    • Goran Lacan,
    • William P. Melega,
    • Simon R. Cherry,
    • Richard M. Leahy,
    • and Desmond J. Smith
    Genome Res. June 1, 2002 12: 868-884; Published in Advance May 16, 2002, doi:10.1101/gr.229002
    ...Multiplex Three-Dimensional Brain Gene Expression Mapping in a Mouse Model of Parkinson's Disease Vanessa M. Brown 1 , 2 , Alex Ossadtchi 3 , Arshad H. Khan 1 , 2 , Simon Yee 1 , Goran Lacan 1 , William P. Melega 1 , Simon...
  10. Resource: Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
    • Xiaoyu Zhuo,
    • Silas Hsu,
    • Deepak Purushotham,
    • Prashant Kumar Kuntala,
    • Jessica K. Harrison,
    • Alan Y. Du,
    • Samuel Chen,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. May 2023 33: 824-835; Published in Advance May 8, 2023, doi:10.1101/gr.277550.122
    ...at the nucleotide level with more than 10 pixels per nucleotide. The sequence strand in the alignment is illustrated using arrows. Syntenic nucleotides from hg38 and mm10 are vertically aligned with gaps inserted. Matching nucleotides are connected using a short vertical line in the alignment track. (B) Displaying...
    OPEN ACCESS ARTICLE
For checked items

Search Results

Next 10 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research