Searching journal content for articles similar to Payen et al. 19 (10): 1710.

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  1. Research: Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus
    • Nikolaos Vakirlis,
    • Véronique Sarilar,
    • Guénola Drillon,
    • Aubin Fleiss,
    • Nicolas Agier,
    • Jean-Philippe Meyniel,
    • Lou Blanpain,
    • Alessandra Carbone,
    • Hugo Devillers,
    • Kenny Dubois,
    • Alexandre Gillet-Markowska,
    • Stéphane Graziani,
    • Nguyen Huu-Vang,
    • Marion Poirel,
    • Cyrielle Reisser,
    • Jonathan Schott,
    • Joseph Schacherer,
    • Ingrid Lafontaine,
    • Bertrand Llorente,
    • Cécile Neuvéglise,
    • and Gilles Fischer
    Genome Res. July 2016 26: 918-932; Published in Advance May 31, 2016, doi:10.1101/gr.204420.116
    ...Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus Nikolaos Vakirlis 1 , 6 , Véronique Sarilar 2 , 6 , Guénola Drillon 1 , 6 , Aubin Fleiss 1 , Nicolas Agier...
  2. Research: Conservation of replication timing reveals global and local regulation of replication origin activity
    • Carolin A. Müller and
    • Conrad A. Nieduszynski
    Genome Res. October 2012 22: 1953-1962; Published in Advance July 5, 2012, doi:10.1101/gr.139477.112
    ...relationship between sensu stricto yeast species (not to scale). (B) Schematic of S. cerevisiae chromosome 6 illustrating the location of replication origins (origins represented by circles; circle area corresponds to origin efficiency in W303; later origin activation time is represented by darker shading...
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  3. Research: Large transcription units unify copy number variants and common fragile sites arising under replication stress
    • Thomas E. Wilson,
    • Martin F. Arlt,
    • So Hae Park,
    • Sountharia Rajendran,
    • Michelle Paulsen,
    • Mats Ljungman,
    • and Thomas W. Glover
    Genome Res. February 2015 25: 189-200; Published in Advance November 4, 2014, doi:10.1101/gr.177121.114
    ...Corresponding author: wilsonte@umich.edu Abstract Copy number variants (CNVs) resulting from genomic deletions and duplications and common fragile sites (CFSs) seen as breaks on metaphase chromosomes are distinct forms of structural chromosome instability precipitated by replication inhibition...
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  4. Research: DNA replication and transcription programs respond to the same chromatin cues
    • Yoav Lubelsky,
    • Joseph A. Prinz,
    • Leyna DeNapoli,
    • Yulong Li,
    • Jason A. Belsky,
    • and David M. MacAlpine
    Genome Res. July 2014 24: 1102-1114; Published in Advance July 1, 2014, doi:10.1101/gr.160010.113
    ...and heterochromatin. One of the first wide replication timing studies in a metazoan identified broad early and late replicating domains (>100 kb) across the euchromatic portion of theDrosophila chromosome arms (Schubeler et al. 2002). A significant correlation between gene expression and time of replication...
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  5. Research: Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome
    • Michaela Schwaiger,
    • Hubertus Kohler,
    • Edward J. Oakeley,
    • Michael B. Stadler,
    • and Dirk Schübeler
    Genome Res. June 2010 20: 771-780; Published in Advance April 30, 2010, doi:10.1101/gr.101790.109
    ...of constitutive heterochromatin. Surprisingly, however, regions with high levels of interspersed repeats on the chromosomal arms, in particular on chromosome 4 and in pericentromeric regions of chromosome 2, behave differently. Here, loss of HP1 results in delayed replication. The fact that these regions...
  6. LETTER: Nonrecurrent MECP2 duplications mediated by genomic architecture-driven DNA breaks and break-induced replication repair
    • Marijke Bauters,
    • Hilde Van Esch,
    • Michael J. Friez,
    • Odile Boespflug-Tanguy,
    • Martin Zenker,
    • Angela M. Vianna-Morgante,
    • Carla Rosenberg,
    • Jaakko Ignatius,
    • Martine Raynaud,
    • Karen Hollanders,
    • Karen Govaerts,
    • Kris Vandenreijt,
    • Florence Niel,
    • Pierre Blanc,
    • Roger E. Stevenson,
    • Jean-Pierre Fryns,
    • Peter Marynen,
    • Charles E. Schwartz,
    • and Guy Froyen
    Genome Res. June 2008 18: 847-858; Published in Advance April 2, 2008, doi:10.1101/gr.075903.107
    ...in recombination ( Kraus et al. 2001 ). It is a DSB repair process in which the broken chromosome end invades another chromosome or chromatid based on only a few nucleotides of homology and replicates the sequence from there on. BIR was initially reported in yeast to repair unprotected or elongate shortened...
  7. Article: Comparative genomics of protoploid Saccharomycetaceae
    • The Génolevures Consortium,
    • Jean-Luc Souciet,
    • Bernard Dujon,
    • Claude Gaillardin,
    • Mark Johnston,
    • Philippe V. Baret,
    • Paul Cliften,
    • David J. Sherman,
    • Jean Weissenbach,
    • Eric Westhof,
    • Patrick Wincker,
    • Claire Jubin,
    • Julie Poulain,
    • Valérie Barbe,
    • Béatrice Ségurens,
    • François Artiguenave,
    • Véronique Anthouard,
    • Benoit Vacherie,
    • Marie-Eve Val,
    • Robert S. Fulton,
    • Patrick Minx,
    • Richard Wilson,
    • Pascal Durrens,
    • Géraldine Jean,
    • Christian Marck,
    • Tiphaine Martin,
    • Macha Nikolski,
    • Thomas Rolland,
    • Marie-Line Seret,
    • Serge Casarégola,
    • Laurence Despons,
    • Cécile Fairhead,
    • Gilles Fischer,
    • Ingrid Lafontaine,
    • Véronique Leh,
    • Marc Lemaire,
    • Jacky de Montigny,
    • Cécile Neuvéglise,
    • Agnès Thierry,
    • Isabelle Blanc-Lenfle,
    • Claudine Bleykasten,
    • Julie Diffels,
    • Emilie Fritsch,
    • Lionel Frangeul,
    • Adrien Goëffon,
    • Nicolas Jauniaux,
    • Rym Kachouri-Lafond,
    • Célia Payen,
    • Serge Potier,
    • Lenka Pribylova,
    • Christophe Ozanne,
    • Guy-Franck Richard,
    • Christine Sacerdot,
    • Marie-Laure Straub,
    • and Emmanuel Talla
    Genome Res. October 2009 19: 1696-1709; Published in Advance June 12, 2009, doi:10.1101/gr.091546.109
    ...of the . This heterogeneity is studied in detail in a separate work (Payen et al. 2009). In brief, it is found that the GC-rich chromosomal segment shows conserved synteny with K. thermotolerans, is devoid of transposable elements, and replicates later than other chromosomes during the S phase. The protoploid yeast species...
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  8. REVIEW: The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases
    • Karen Usdin
    Genome Res. July 2008 18: 1011-1019; doi:10.1101/gr.070409.107
    ...the potential for other tandem repeat sequences to cause chromosome fragility. Long CTG•CAG repeats are fragile in yeast ( Freudenreich et al. 1998 ). However, no agent has yet been identified that induces fragility of these repeats in human cells, and whether, in fact, they are fragile in mammalian cells...
  9. REVIEW: Structure of Chromosomal Duplicons and their Role in Mediating Human Genomic Disorders
    • Yonggang Ji,
    • Evan E. Eichler,
    • Stuart Schwartz,
    • and Robert D. Nicholls
    Genome Res. May 1, 2000 10: 597-610; doi:10.1101/gr.10.5.597
    ...Structure of Chromosomal Duplicons and their Role in Mediating Human Genomic Disorders Yonggang Ji 1 , Evan E. Eichler , Stuart Schwartz , and Robert D. Nicholls 2 Department of Genetics, Case Western Reserve University School of Medicine...
  10. Research: Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans
    • Yiguan Wang,
    • Paul McNeil,
    • Rashidatu Abdulazeez,
    • Marta Pascual,
    • Susan E. Johnston,
    • Peter D. Keightley,
    • and Darren J. Obbard
    Genome Res. April 2023 33: 587-598; Published in Advance April 10, 2023, doi:10.1101/gr.277383.122
    ...between the number of crossovers detected and the number of available SNP markers in a chromosome arm (P-value = 0.126; Supplemental Fig. S8), suggesting our ability to detect crossovers is not strongly affected by variation in the number of SNPs.View larger version: In this window In a new window Figure...
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