Searching journal content for articles similar to Paschold et al. 22 (12): 2445.

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  1. Research: The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
    • Michael Regulski,
    • Zhenyuan Lu,
    • Jude Kendall,
    • Mark T.A. Donoghue,
    • Jon Reinders,
    • Victor Llaca,
    • Stephane Deschamps,
    • Andrew Smith,
    • Dan Levy,
    • W. Richard McCombie,
    • Scott Tingey,
    • Antoni Rafalski,
    • James Hicks,
    • Doreen Ware,
    • and Robert A. Martienssen
    Genome Res. October 2013 23: 1651-1662; Published in Advance June 5, 2013, doi:10.1101/gr.153510.112
    ...; 4 USDA-ARS NAA, Robert W. Holley Center for Agriculture and Health, Ithaca, New York 14853, USA ↵ 5 These authors contributed equally to this work. Abstract The maize genome, with its large complement of transposons and repeats, is a paradigm for the study of epigenetic...
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  2. Research: Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
    • Ruth A. Swanson-Wagner,
    • Steven R. Eichten,
    • Sunita Kumari,
    • Peter Tiffin,
    • Joshua C. Stein,
    • Doreen Ware,
    • and Nathan M. Springer
    Genome Res. December 2010 20: 1689-1699; Published in Advance October 29, 2010, doi:10.1101/gr.109165.110
    .... elegans (Maydan et al. 2010) and Arabidopsis thaliana (Santuari et al. 2010) have also identified numerous CNVs. Zea mays (maize) is a highly polymorphic species (for review, see Buckler et al. 2006; Messing and Dooner 2006; Springer and Stupar 2007). The recent completion of a reference from one genotype...
  3. REVIEW: Allelic variation and heterosis in maize: How do two halves make more than a whole?
    • Nathan M. Springer and
    • Robert M. Stupar
    Genome Res. March 2007 17: 264-275; Published in Advance January 25, 2007, doi:10.1101/gr.5347007
    ...levels outside the range of the levels of the two parents ( Auger et al. 2005a ). This study suggested that maize hybrids may have different expression patterns from what would be predicted by the mid-parent values of the two inbred parents. Several specialized microarray approaches were used to document...
  4. Research: Improved redox homeostasis owing to the up-regulation of one-carbon metabolism and related pathways is crucial for yeast heterosis at high temperature
    • Liang Song,
    • Jun-Yan Shi,
    • Shou-Fu Duan,
    • Da-Yong Han,
    • Kuan Li,
    • Ri-Peng Zhang,
    • Peng-Yu He,
    • Pei-Jie Han,
    • Qi-Ming Wang,
    • and Feng-Yan Bai
    Genome Res. April 2021 31: 622-634; Published in Advance March 15, 2021, doi:10.1101/gr.262055.120
    ...with their parents. We found that heterosis was prevalent in the F1 hybrids at 40°C. A hump-shaped relationship between heterosis and parental genetic distance was observed. We then analyzed transcriptomes of selected heterotic and depressed F1 hybrids and their parents growing at 40°C and found that genes...
  5. Research: Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass
    • John T. Lovell,
    • Scott Schwartz,
    • David B. Lowry,
    • Eugene V. Shakirov,
    • Jason E. Bonnette,
    • Xiaoyu Weng,
    • Mei Wang,
    • Jenifer Johnson,
    • Avinash Sreedasyam,
    • Christopher Plott,
    • Jerry Jenkins,
    • Jeremy Schmutz,
    • and Thomas E. Juenger
    Genome Res. April 2016 26: 510-518; Published in Advance March 7, 2016, doi:10.1101/gr.198135.115
    ...(Keightley andHill 1990; Kondrashov and Turelli 1992), leading to the hypothesis that trans-acting expression regulationmay be subjected to purifying selection (Emerson et al. 2010), while cis-acting regulatory elements may respond to directional selection and contribute to adaptive differentiation (Schaefke...
  6. Research: LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans
    • Shengjun Tan,
    • Margarida Cardoso-Moreira,
    • Wenwen Shi,
    • Dan Zhang,
    • Jiawei Huang,
    • Yanan Mao,
    • Hangxing Jia,
    • Yaqiong Zhang,
    • Chunyan Chen,
    • Yi Shao,
    • Liang Leng,
    • Zhonghua Liu,
    • Xun Huang,
    • Manyuan Long,
    • and Yong E. Zhang
    Genome Res. December 2016 26: 1663-1675; Published in Advance October 20, 2016, doi:10.1101/gr.204925.116
    ...sequences of three parental genes and is flanked by an LTR retrotransposon (Johns et al. 1985; Elrouby and Bureau 2001, 2010). The copy number of Bs1 ranges from one to five across various species of the genus Zea, and all individual copies share the same switch points (Elrouby and Bureau 2010). Thus, Bs1...
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  7. Letter: Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • Jesse D. Hollister and
    • Brandon S. Gaut
    Genome Res. August 2009 19: 1419-1428; Published in Advance May 28, 2009, doi:10.1101/gr.091678.109
    ...and recombination in the partial selfers Caenorhabditis elegans or Arabidopsis thaliana (Duret et al. 2000; Wright et al. 2003). In part, this may reflect the theoretical expectation that ectopic recombination among TEs occurs less frequently in inbred species, because ectopic recombination events are more likely...
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