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Perspective: Defining cell types and states with single-cell genomics
- Cole Trapnell
Genome Res. October 2015 25: 1491-1498; doi:10.1101/gr.190595.115
.... Several recent single-cell expression studies have constructed regulatory networks from the data using a variety of machine learning–based methods. For example, Buganim et al. (2012) constructed a Bayesian network to define the hierarchy of transcriptional regulators that drive reprogramming frommouse...
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Editorial: Innovations in computational biology: RECOMB 2024 Special Issue
- Jian Ma and
- Bonnie Berger
Genome Res. September 2024 34: vii-viii; doi:10.1101/gr.280036.124
.... A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data. Genome Res (this issue) 34: 1384–1396. doi:10.1101/gr.279126.124 ↵Saha E, Fanfani V, Mandros P, Ben Guebila M, Fischer J, Shutta KH, DeMeo DL, Lopes-Ramos CM, Quackenbush J. 2024. Bayesian inference...

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