Searching journal content for articles similar to Painter et al. 27 (6): 1074.

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  1. Research: Transcriptional variation in the malaria parasite Plasmodium falciparum
    • Núria Rovira-Graells,
    • Archna P. Gupta,
    • Evarist Planet,
    • Valerie M. Crowley,
    • Sachel Mok,
    • Lluís Ribas de Pouplana,
    • Peter R. Preiser,
    • Zbynek Bozdech,
    • and Alfred Cortés
    Genome Res. May 2012 22: 925-938; Published in Advance March 13, 2012, doi:10.1101/gr.129692.111
    ...genetic variation has been extensively characterized, but the level of epigenetic plasticity remains largely unexplored. Here we provide a comprehensive characterization of transcriptional variation in the most lethal malaria parasite, Plasmodium falciparum, based on highly accurate transcriptional...
  2. Method: Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories
    • Borislav Hrisimirov Hristov,
    • William Stafford Noble,
    • and Alessandro Bertero
    Genome Res. October 2024 34: 1610-1623; Published in Advance September 25, 2024, doi:10.1101/gr.278327.123
    .... falciparum immune evasionHaving developed trans-C, we set out to test its ability to uncover known sets of loci that interact together in trans in three different organisms. First, we focused on the protozoan Plasmodium falciparum, the parasite responsible for the most lethal form of malaria. The three...
  3. Method: Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants
    • Iraad F. Bronner,
    • Thomas D. Otto,
    • Min Zhang,
    • Kenneth Udenze,
    • Chengqi Wang,
    • Michael A. Quail,
    • Rays H.Y. Jiang,
    • John H. Adams,
    • and Julian C. Rayner
    Genome Res. July 2016 26: 980-989; Published in Advance May 10, 2016, doi:10.1101/gr.200279.115
    ...Bac mutants in the human malaria parasite Plasmodium falciparum but should be applicable to many other eukaryotic genomes. QIseq proved accurate, confirming known sites in >100 mutants, and sensitive, identifying and monitoring sites over a >10,000-fold dynamic range of sequence counts. Applying QIseq...
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  4. Method: Variant antigen repertoires in Trypanosoma congolense populations and experimental infections can be profiled from deep sequence data using universal protein motifs
    • Sara Silva Pereira,
    • Aitor Casas-Sánchez,
    • Lee R. Haines,
    • Moses Ogugo,
    • Kihara Absolomon,
    • Mandy Sanders,
    • Steve Kemp,
    • Álvaro Acosta-Serrano,
    • Harry Noyes,
    • Matthew Berriman,
    • and Andrew P. Jackson
    Genome Res. September 2018 28: 1383-1394; Published in Advance July 13, 2018, doi:10.1101/gr.234146.118
    ...natural infections and sequential laboratory tsetse transmissions of the same parasite clone (Barry et al. 1983). In P. falciparum, the var gene expression radically changes following a single mosquito passage (Bachmann et al. 2016). In Plasmodium chabaudi, vector passaging not only alters cir (chabaudi...
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  5. Letter: Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans
    • Andrew P. Jackson,
    • John A. Gamble,
    • Tim Yeomans,
    • Gary P. Moran,
    • David Saunders,
    • David Harris,
    • Martin Aslett,
    • Jamie F. Barrell,
    • Geraldine Butler,
    • Francesco Citiulo,
    • David C. Coleman,
    • Piet W.J. de Groot,
    • Tim J. Goodwin,
    • Michael A. Quail,
    • Jacqueline McQuillan,
    • Carol A. Munro,
    • Arnab Pain,
    • Russell T. Poulter,
    • Marie-Adèle Rajandream,
    • Hubert Renauld,
    • Martin J. Spiering,
    • Adrian Tivey,
    • Neil A.R. Gow,
    • Barclay Barrell,
    • Derek J. Sullivan,
    • and Matthew Berriman
    Genome Res. December 2009 19: 2231-2244; Published in Advance September 10, 2009, doi:10.1101/gr.097501.109
    ..., the principal differences in genomic repertoire concern expansion of the TLO gene family of putative transcription factors and the IFA family of putative transmembrane proteins in C. albicans , which represent novel candidate virulence-associated factors. The results suggest that the recent evolutionary...
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