Searching journal content for articles similar to Ostrin et al. 16 (4): 466.

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  1. Research: tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis
    • Junling Shi,
    • Jiaqi Xu,
    • Jun Ma,
    • and Feng He
    Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123
    ...simulans and Drosophila yakuba (Supplemental Fig. S5D). Altogether, these results suggested that 5′-tsRNA accumulation during the larva-to-pupa transition in Drosophila is a developmentally controlled and evolutionarily conserved event.5′-tsRNAs exert regulatory activities through target site recognition...
  2. Research: Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions
    • Marina Naval-Sánchez,
    • Delphine Potier,
    • Lotte Haagen,
    • Máximo Sánchez,
    • Sebastian Munck,
    • Bram Van de Sande,
    • Fernando Casares,
    • Valerie Christiaens,
    • and Stein Aerts
    Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112
    ..., with the aim to gain further knowledge of the transcriptional program underlying eye development, and to identify new eye enhancers. The master regulators of Drosophila eye development frame the conserved retinal determination gene network (RDGN), with five highly conserved TFs, namely, eyeless (ey; PAX6...
  3. Method: Discovery and assessment of conserved Pax6 target genes and enhancers
    • Pedro Coutinho,
    • Sofia Pavlou,
    • Shipra Bhatia,
    • Kevin J. Chalmers,
    • Dirk A. Kleinjan,
    • and Veronica van Heyningen
    Genome Res. August 2011 21: 1349-1359; Published in Advance May 26, 2011, doi:10.1101/gr.124115.111
    ...conservation has led to some successful studies identifying direct targets of selector gene transcription (Mann and Carroll 2002), including those for eyeless, the Drosophila Pax6 gene (Ostrin et al. 2006), and, in vertebrates, targets of Atoh7 (Ath5) and Pax2/5/8 were identified and validated in medaka (Del...
  4. Research: Less effective selection leads to larger genomes
    • Tristan Lefébure,
    • Claire Morvan,
    • Florian Malard,
    • Clémentine François,
    • Lara Konecny-Dupré,
    • Laurent Guéguen,
    • Michèle Weiss-Gayet,
    • Andaine Seguin-Orlando,
    • Luca Ermini,
    • Clio Der Sarkissian,
    • N. Pierre Charrier,
    • David Eme,
    • Florian Mermillod-Blondin,
    • Laurent Duret,
    • Cristina Vieira,
    • Ludovic Orlando,
    • and Christophe Jean Douady
    Genome Res. June 2017 27: 1016-1028; Published in Advance April 19, 2017, doi:10.1101/gr.212589.116
    ...control for an adaptive impact of size on life history traits but find no correlation between body size, or growth rate, and size. We show instead that the independent increases in size measured in subterranean isopods are the direct consequence of increasing invasion rates by repeat elements, which...
  5. Resource: Digital expression profiling of the compartmentalized translatome of Purkinje neurons
    • Anton Kratz,
    • Pascal Beguin,
    • Megumi Kaneko,
    • Takahiko Chimura,
    • Ana Maria Suzuki,
    • Atsuko Matsunaga,
    • Sachi Kato,
    • Nicolas Bertin,
    • Timo Lassmann,
    • Réjan Vigot,
    • Piero Carninci,
    • Charles Plessy,
    • and Thomas Launey
    Genome Res. August 2014 24: 1396-1410; Published in Advance June 5, 2014, doi:10.1101/gr.164095.113
    ...to determine the translatome of a specific neuron. Targeting of a ribosome-capturing transgene to a rat Purkinje neuron by engineered AAV, coupled with microdissection and cellular fractionation, led to the identification of the translatomes of PC’s subcellular compartments (dendrites, cytoplasm, and r...
    OPEN ACCESS ARTICLE
  6. LETTER: Systematic Characterization of the Zinc-Finger-Containing Proteins in the Mouse Transcriptome
    • Timothy Ravasi,
    • Thomas Huber,
    • Mihaela Zavolan,
    • Alistair Forrest,
    • Terry Gaasterland,
    • Sean Grimmond,
    • RIKEN GER Group,
    • GSL Members,
    • and David A. Hume
    Genome Res. June 2003 13: 1430-1442; doi:10.1101/gr.949803
    ...6), novel members of the SP/XKLF transcription factor family. Genomics 70 : 93 -101. ↵ Senti, K., Keleman, K., Eisenhaber, F., and Dickson, B.J. 2000 . brakeless is required for lamina targeting of R1–R6 axons in the Drosophila visual system. Development 127 : 2291 -2301. ↵ Thompson, J.D., Gibson, T...
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