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ARTICLE: Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination.
- M A Ansari-Lari,
- Y Shen,
- D M Muzny,
- W Lee,
- and R A Gibbs
Genome Res. March 1997 7: 268-280; doi:10.1101/gr.7.3.268
..., R.A. , Belmont. J.W. Oeltjen, J.C., Malley, T.M. Muzny, D.M. Miller, W. Gibbs, R.A. and Belmont. J.W. 1997 . Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 11 : (in press). Oliva, D., , Cali, L. , Feo...
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LETTER: Long-Range Comparison of Human and Mouse SCL Loci: Localized Regions of Sensitivity to Restriction Endonucleases Correspond Precisely with Peaks of Conserved Noncoding Sequences
- Berthold Göttgens,
- James G.R. Gilbert,
- Linda M. Barton,
- Darren Grafham,
- Jane Rogers,
- David R. Bentley,
- and Anthony R. Green
Genome Res. January 1, 2001 11: 87-97; doi:10.1101/gr.153001
...; Jang et al. 1999 ). Besides, analysis of the human and murine Bruton's tyrosine kinase loci revealed a new enhancer with activity in transfection assays ( Oeltjen et al. 1997 ). Comparison of human and murine β - globin loci showed that peaks of high homology corresponded with functional regulatory...
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LETTER: Evolutionarily Conserved Sequences on Human Chromosome 21
- Kelly A. Frazer,
- John B. Sheehan,
- Renee P. Stokowski,
- Xiyin Chen,
- Roya Hosseini,
- Jan-Fang Cheng,
- Stephen P.A. Fodor,
- David R. Cox,
- and Nila Patil
Genome Res. October 1, 2001 11: 1651-1659; doi:10.1101/gr.198201
...4, 13 and 5 by cross-species sequence comparisons. Science 288 : 136 – 140 . ↵ Oeltjen J.C. , Malley T.M. , Muzny D.M. , Miller W. , Gibbs R.A. , Belmont J.W. ( 1997 ) Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains...
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LETTER: Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse
- Karen D. Tsuchiya,
- John M. Greally,
- Yajun Yi,
- Kevin P. Noel,
- Jean-Pierre Truong,
- and Christine M. Disteche
Genome Res. July 2004 14: 1275-1284; Published in Advance June 14, 2004, doi:10.1101/gr.2575904
...of novel regulatory elements within the α-globin gene cluster and the Bruton's tyrosine kinase locus ( Oeltjen et al. 1997 ; Flint et al. 2001 ). Comparative analysis has been used to delineate imprinted gene clusters, as well as the X-inactivation center, which includes the XIST gene ( Engemann et al...
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LETTER: Comparative Analysis of the α-Like Globin Clusters in Mouse, Rat, and Human Chromosomes Indicates a Mechanism Underlying Breaks in Conserved Synteny
- Cristina Tufarelli,
- Ross Hardison,
- Webb Miller,
- Jim Hughes,
- Kevin Clark,
- Nicki Ventress,
- Anna Maria Frischauf,
- and Douglas R. Higgs
Genome Res. April 2004 14: 623-630; doi:10.1101/gr.2143604
...on mouse chromosome 17. Mamm. Genome 6 : 149 -150. ↵ Oeltjen, J.C., Malley, T.M., Muzny, D.M., Miller, W., Gibbs, R.A., and Belmont, J.W. 1997 . Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7 : 315 -329...
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METHODS: Detection and Visualization of Compositionally Similar cis-Regulatory Element Clusters in Orthologous and Coordinately Controlled Genes
- Anil G. Jegga,
- Shawn P. Sherwood,
- James W. Carman,
- Andrew T. Pinski,
- Jerry L. Phillips,
- John P. Pestian,
- and Bruce J. Aronow
Genome Res. September 1, 2002 12: 1408-1417; doi:10.1101/gr.255002
...) have also shown this fact in their studies on BTK (Bruton's Tyrosine Kinase) and HBB (β-Hemoglobin) loci, respectively. Approaches that cluster together sites with some biologically intuitive connection between the predicted TF-binding sites and the function of the gene often reduce the output...
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LETTER: Human and Mouse α-Synuclein Genes: Comparative Genomic Sequence Analysis and Identification of a Novel Gene Regulatory Element
- Jeffrey W. Touchman,
- Anindya Dehejia,
- Ornit Chiba-Falek,
- Deborah E. Cabin,
- Jody R. Schwartz,
- Bonnie M. Orrison,
- Mihael H. Polymeropoulos,
- and Robert L. Nussbaum
Genome Res. January 1, 2001 11: 78-86; doi:10.1101/gr.165801
....M. , Muzny D.M. , Miller W. , Gibbs R.A. , Belmont J.W. ( 1997 ) Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7 : 315 – 329 . ↵ Polymeropoulos M.H. , Higgins J.J. , Golbe L.I. , Johnson W.G. , Ide S.E. , Di...
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PERSPECTIVE: Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome
- Ross C. Hardison,
- John Oeltjen,
- and Webb Miller
Genome Res. October 1, 1997 7: 959-966; doi:10.1101/gr.7.10.959
...) Large scale comparative sequence analysis of the human and murine Bruton’s tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7 : 315 – 329 . ↵ Robbins J. ( 1996 ) Regulation of cardiac gene expression during development. Cardiovascul. Res. 31 : E2 – E16 . ↵ Schuler G.D. , Boguski M...
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LETTER: Analysis of the Cat Eye Syndrome Critical Region in Humans and the Region of Conserved Synteny in Mice: A Search for Candidate Genes at or near the Human Chromosome 22 Pericentromere
- Tim K. Footz,
- Polly Brinkman-Mills,
- Graham S. Banting,
- Stephanie A. Maier,
- M. Ali Riazi,
- Lindsay Bridgland,
- Song Hu,
- Bruce Birren,
- Shinsei Minoshima,
- Nobuyoshi Shimizu,
- HuaQin Pan,
- Thuan Nguyen,
- Fang Fang,
- Ying Fu,
- Linda Ray,
- Hui Wu,
- Steve Shaull,
- Stacey Phan,
- Ziyun Yao,
- Feng Chen,
- Axin Huan,
- Ping Hu,
- Qiaoyan Wang,
- Phoebe Loh,
- Sulan Qi,
- Bruce A. Roe,
- and Heather E. McDermid
Genome Res. June 1, 2001 11: 1053-1070; doi:10.1101/gr.154901
...sequence may be present in the proximal 400 kb of the distal CESCR, the majority of this region appears to represent duplications of syntenic and nonsyntenic loci in the . Preliminary analysis indicates this pattern of duplications extends over an additional 1 Mb to the centromere. Analysis...
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LETTER: Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence
- Tatyana B. Nesterova,
- Sergey Ya. Slobodyanyuk,
- Eugene A. Elisaphenko,
- Alexander I. Shevchenko,
- Colette Johnston,
- Marina E. Pavlova,
- Igor B. Rogozin,
- Nikolay N. Kolesnikov,
- Neil Brockdorff,
- and Suren M. Zakian
Genome Res. May 1, 2001 11: 833-849; doi:10.1101/gr.174901
...Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence Tatyana B. Nesterova 1 , 2 , 3 , Sergey Ya. Slobodyanyuk 1 , Eugene A. Elisaphenko 1...

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