Searching journal content for articles similar to Ocampo et al. 29 (3): 407.

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  1. Research: Intergenic accumulation of RNA polymerase II maintains the potential for swift transcriptional restart upon release from quiescence
    • Manuela Baquero Pérez,
    • Gertjan Laenen,
    • Isabelle Loïodice,
    • Mickaël Garnier,
    • Ugo Szachnowski,
    • Antonin Morillon,
    • Myriam Ruault,
    • and Angela Taddei
    Genome Res. October 2025 35: 2226-2239; Published in Advance August 12, 2025, doi:10.1101/gr.279874.124
    ...remodeling complex was proposed to play a crucial role in this rapid reignition of transcription upon nutrient addition (Cucinotta et al. 2021). However, the extent to which the transcription machinery is associated with the quiescent is still debated, with early studies indicating poised RNA polymerase II...
  2. Method: Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome
    • Elisa Oberbeckmann,
    • Michael Wolff,
    • Nils Krietenstein,
    • Mark Heron,
    • Jessica L. Ellins,
    • Andrea Schmid,
    • Stefan Krebs,
    • Helmut Blum,
    • Ulrich Gerland,
    • and Philipp Korber
    Genome Res. December 2019 29: 1996-2009; Published in Advance November 6, 2019, doi:10.1101/gr.253419.119
    ...absolute occupancy (Supplemental Fig. S6C).Increased binding of RSC remodeling complex correlates with lower absolute occupancyBecause it was not RNA polymerase passage that reduced absolute occupancy in transcribed regions, we turned to the ATP-dependent chromatin remodeling complex RSC, which...
  3. Research: Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation
    • Hongfang Qiu,
    • Răzvan V. Chereji,
    • Cuihua Hu,
    • Hope A. Cole,
    • Yashpal Rawal,
    • David J. Clark,
    • and Alan G. Hinnebusch
    Genome Res. February 2016 26: 211-225; Published in Advance November 24, 2015, doi:10.1101/gr.196337.115
    ...et al. 1999) and impairs remodeling and eviction at PHO5; however, binding of activator Pho4 to the PHO5 UAS is also reduced in snf2Δ cells (Adkins et al. 2007; Barbaric et al. 2007). Reduced Pho4 binding could also apply to overlapping functions described for SWI/SNF, Ino80, RSC, Isw1, and Chd1...
  4. Research: Rtt109 promotes nucleosome replacement ahead of the replication fork
    • Felix Jonas,
    • Gilad Yaakov,
    • and Naama Barkai
    Genome Res. June 2022 32: 1089-1098; Published in Advance May 24, 2022, doi:10.1101/gr.276674.122
    ..., can mediate the recruitment of chromatin remodelers such as the SWI/SNF or RSC complexes to regulate access to DNA (Hong et al. 1993; Lee et al. 1993; Bauer et al. 1994; Zhang et al. 2010; Chatterjee et al. 2011). Complementing these mechanisms that act on DNA-bound histones is the process...
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