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Research: Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza
- Rodolphe Dombey,
- Daniel Buendía-Ávila,
- Verónica Barragán-Borrero,
- Laura Diezma-Navas,
- Arturo Ponce-Mañe,
- José Mario Vargas-Guerrero,
- Rana Elias,
- and Arturo Marí-Ordóñez
Genome Res. March 2025 35: 522-544; Published in Advance March 4, 2025, doi:10.1101/gr.279532.124
...) retroelements (RTEs): Ty1/Copia (RLC) and Ty3/Gypsy (RLG). LTR-RTEs are the most abundant class of TEs in the Spirodela , collectively representing >50% of the TE fraction of the and largely contributing as well to that of Arabidopsis (Fig. 4B; Supplemental Fig. S22). In addition, the genetic structure...
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Research: Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA
- Seung Cho Lee,
- Evan Ernst,
- Benjamin Berube,
- Filipe Borges,
- Jean-Sebastien Parent,
- Paul Ledon,
- Andrea Schorn,
- and Robert A. Martienssen
Genome Res. April 2020 30: 576-588; Published in Advance April 17, 2020, doi:10.1101/gr.259044.119
.... 2017). In Arabidopsis, transcriptional activation of some Ty1/copia retrotransposons is triggered by stress, and their retrotransposition rates are enhanced by loss of the 24-nt small RNA pathway (Mirouze et al. 2009; Ito et al. 2011). In contrast, in ddm1 mutants and wild-type (WT) pollen, most...

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