Searching journal content for articles similar to O’Rourke et al. 16 (8): 1005.

Displaying results 1-10 of 6334

For checked items

view abstracts
download to citation manager

Select this article
Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
- Shahmir Naseer,
- Thomas C Clark,
- Bertrand Collet,
- Pooran Dewari,
- Damir Baranasic,
- Daniel J Macqueen,
- Pierre Boudinot,
- and Samuel A.M. Martin
Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
...provides novel insights into the genomic regulatory landscape underlying antiviral 33 immunity in a farmed fish with a complex . 34 Introduction 35 The innate immune response to viral infection, which is mainly based on the type I interferon 36 (type I IFN) pathway is crucial to both disease progression...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Research: Synergistic regulation by H3K36 and H3K27 methylation defines the chromatin landscape to control virulence and secondary metabolism in a fungal pathogen
- Xingmin Han,
- Chenghui Xu,
- Yiyi Ren,
- Meiling Guo,
- Jiayue Yan,
- Xuan Wang,
- Chao Liu,
- Qin Gu,
- Xing-Xing Shen,
- Zhonghua Ma,
- and Yun Chen
Genome Res. November 2025 35: 2472-2487; Published in Advance October 14, 2025, doi:10.1101/gr.280560.125
.... graminearum as a model to explore the biological functions of HMT candidates in cluster 1.Cluster 1 SET domain proteins regulate histone methylation and pathogenicity in F. graminearumF. graminearum harbors 19 SET domain proteins, with seven in cluster 1, 10 in cluster 2, and two in cluster 3 (Supplemental...
Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
...). These findings suggest that C. nigoni populations may experience substantially higher selection pressure from pathogens in their native environments compared with C. briggsae populations.Genes encoding Cullin-E3 ubiquitin-ligase-adaptors are major contributors to both gene family and genomic sequence divergence...
Select this article
Research: Endonucleolytic cleavage is the primary mechanism of decay elicited by C. elegans nonsense-mediated mRNA decay
- Marcus J. Viscardi,
- Enisha Sehgal,
- and Joshua A. Arribere
Genome Res. June 2025 35: 1337-1348; Published in Advance May 9, 2025, doi:10.1101/gr.280046.124
...RNA molecules as they exist in vivo. With these data, we set out to address the relative contributions of decapping, deadenylation, and endonucleolytic cleavage, as well as their genetic dependency on SMG-5 and SMG-6.ResultsC. elegans SMG-2 (UPF1), SMG-5, SMG-6, and SMG-7 repress a common set of mRNAsSMG-5, SMG...
Select this article
Method: Automated interpretable artificial intelligence genomic prediction with AIGP
- Lei Wei,
- Ziqin Jiang,
- Baoliang Fan,
- Yidan Yan,
- Zhenqiang Xu,
- Xiaoxiang Hu,
- and Yuzhe Wang
Genome Res. April 2026 36: 814-826; Published in Advance March 5, 2026, doi:10.1101/gr.281006.125
....edu.cnAbstractPredicting phenotypes from genomic mutations remains a major genetic challenge. Traditional statistical methods (such as GBLUP and BayesR) have limitations, including reliance on artificial prior assumptions, and hard to capture epistatic effects. Machine learning (ML) has emerged as a powerful alternative for genomic...
Select this article
Resource: CGC1, a new reference genome for Caenorhabditis elegans
- Kazuki Ichikawa,
- Massa J. Shoura,
- Karen L. Artiles,
- Dae-Eun Jeong,
- Chie Owa,
- Haruka Kobayashi,
- Yoshihiko Suzuki,
- Manami Kanamori,
- Yu Toyoshima,
- Yuichi Iino,
- Ann E. Rougvie,
- Lamia Wahba,
- Andrew Z. Fire,
- Erich M. Schwarz,
- and Shinichi Morishita
Genome Res. August 2025 35: 1902-1918; Published in Advance July 15, 2025, doi:10.1101/gr.280274.124
...assemble CGC1's longest TRs. Because C. elegans lies toward the lower end of genomic complexity for multicellular eukaryotes (https://www.size.com/), the putative TR sequences in automatic assemblies for other eukaryotic s should be viewed with caution; it is likely that large TRs like those of C. elegans...
OPEN ACCESS ARTICLE
Select this article
Corrigendum: Corrigendum: TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation
- Wenli Xu,
- Chang Liu,
- Bing Deng,
- Penghui Lin,
- Zhenghua Sun,
- Anrui Liu,
- Jiajia Xuan,
- Yuying Li,
- Keren Zhou,
- Xiaoqin Zhang,
- Qiaojuan Huang,
- Hui Zhou,
- Qingyu He,
- Bin Li,
- Lianghu Qu,
- and Jianhua Yang
Genome Res. April 2026 36: 885; doi:10.1101/gr.282041.126
...Wenli Xu, Chang Liu, Bing Deng, Penghui Lin, Zhenghua Sun, Anrui Liu, Jiajia Xuan, Yuying Li, Keren Zhou, Xiaoqin Zhang, Qiaojuan Huang, Hui Zhou, Qingyu He, Bin Li, Lianghu Qu and Jianhua Yang Genome Research 32: 1026–1041 (2022)The original version of the Supplemental Material associated...
OPEN ACCESS ARTICLE
Select this article
Mini-Review: A Hitchhiker's Guide to long-read genomic analysis
- Medhat Mahmoud,
- Daniel P. Agustinho,
- and Fritz J. Sedlazeck
Genome Res. April 2025 35: 545-558; doi:10.1101/gr.279975.124
...Medhat Mahmoud1,4, Daniel P. Agustinho1,4 and Fritz J. Sedlazeck1,2,3 1Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA; 2Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA; 3Department of Computer Science, Rice...
Select this article
Method: Autoencoders for genomic variation analysis
- Margarita Geleta,
- Daniel Mas Montserrat,
- Xavier Giro-i-Nieto,
- and Alexander G. Ioannidis
Genome Res. February 2026 36: 348-360; Published in Advance January 20, 2026, doi:10.1101/gr.280086.124
...for ancestry classificationIndividuals that are more closely related in ancestry have spatial autocorrelations in their genomic sequences. This phenomenon is translated into population clusters using dimensionality reduction techniques (Fig. 4). The most common approaches to address ancestry classification...
OPEN ACCESS ARTICLE
Select this article
Research: A low-abundance class of Dicer-dependent siRNAs produced from a variety of features in C. elegans
- Thiago L. Knittel,
- Brooke E. Montgomery,
- Alex J. Tate,
- Ennis W. Deihl,
- Anastasia S. Nawrocki,
- Frederic J. Hoerndli,
- and Taiowa A. Montgomery
Genome Res. December 2024 34: 2203-2216; Published in Advance December 2, 2024, doi:10.1101/gr.279083.124
.... 2009; Conine et al. 2010; Vasale et al. 2010).Both exogenous RNAi and viral infection trigger a silencing response involving the production of exogenous canonical siRNAs in C. elegans (Ketting et al. 2001; Ashe et al. 2013). Furthermore, studies exploring the interplay between RNAi pathways and RNA...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to O’Rourke et al. 16 (8): 1005.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: