Searching journal content for articles similar to Nesterova et al. 11 (5): 833.

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  1. Research: Targeted deletion of a 170-kb cluster of LINE-1 repeats and implications for regional control
    • Miguel L. Soares,
    • Carol A. Edwards,
    • Frances L. Dearden,
    • Sacri R. Ferrón,
    • Scott Curran,
    • Jennifer A. Corish,
    • Rebecca C. Rancourt,
    • Sarah E. Allen,
    • Marika Charalambous,
    • Malcolm A. Ferguson-Smith,
    • Willem Rens,
    • David J. Adams,
    • and Anne C. Ferguson-Smith
    Genome Res. March 2018 28: 345-356; Published in Advance January 24, 2018, doi:10.1101/gr.221366.117
    ...the consequences of the deletion on regional control of gene expression and imprinting.ResultsLarge L1 arrays are associated with tandem gene clusters in the mammalian To determine where in the mouse stretches of dense LINE content reside, regions containing >70% LINEs of >100 kb length were cataloged. Sixty...
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  2. Research: Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus
    • Julie E. Horvath,
    • Christina B. Sheedy,
    • Stephanie L. Merrett,
    • Abdoulaye Banire Diallo,
    • David L. Swofford,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • and Huntington F. Willard
    Genome Res. June 2011 21: 850-862; Published in Advance April 25, 2011, doi:10.1101/gr.111849.110
    ...of high conservation among all species indicates that the most conserved regions are exons of genes (Fig. 3B). There is also a high level of conservation over the exons of the XIST locus (Fig. 3B). There are small peaks of conservation outside of coding regions, themajority of which are unique sequences...
  3. LETTER: Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine
    • Corinne Chureau,
    • Marine Prissette,
    • Agnès Bourdet,
    • Valérie Barbe,
    • Laurence Cattolico,
    • Louis Jones,
    • André Eggen,
    • Philip Avner,
    • and Laurent Duret
    Genome Res. June 1, 2002 12: 894-908; Published in Advance November 21, 2000, doi:10.1101/gr.152902
    ..., including the Xist gene. These comparisons have revealed conserved genes, both coding and noncoding, conserved CpG islands and, more surprisingly, conserved pseudogenes. The distribution of repeated elements, especially LINE repeats, in the mouse Xic region when compared to the rest of the genome does...
  4. ARTICLE: Identification of Putative Noncoding RNAs Among the RIKEN Mouse Full-Length cDNA Collection
    • Koji Numata,
    • Akio Kanai,
    • Rintaro Saito,
    • Shinji Kondo,
    • Jun Adachi,
    • Laurens G. Wilming,
    • David A. Hume,
    • RIKEN GER Group,
    • GSL Members,
    • Yoshihide Hayashizaki,
    • and Masaru Tomita
    Genome Res. June 2003 13: 1301-1306; doi:10.1101/gr.1011603
    ....I., Johnston, C., Pavlova, M.E., Rogozin, I.B., Kolesnikov, N.N., Brockdorff, N., and Zakian, S.M. 2001 . Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res. 11 : 833 -849. ↵ Okazaki, Y...
  5. Methods: Conserved introns reveal novel transcripts in Drosophila melanogaster
    • Michael Hiller,
    • Sven Findeiß,
    • Sandro Lein,
    • Manja Marz,
    • Claudia Nickel,
    • Dominic Rose,
    • Christine Schulz,
    • Rolf Backofen,
    • Sonja J. Prohaska,
    • Gunter Reuter,
    • and Peter F. Stadler
    Genome Res. July 2009 19: 1289-1300; Published in Advance May 20, 2009, doi:10.1101/gr.090050.108
    ...have significantly conserved sequences (Panga et al. 2006). For example, the XIST ncRNA has a clear function in X chromosome inactivation in mammals (Kelley and Kuroda 2000); however, a comparison of human and mouse XIST reveals a low overall sequence identity (Nesterova et al. 2001). While our...
  6. PERSPECTIVE: Raising the estimate of functional human sequences
    • Michael Pheasant and
    • John S. Mattick
    Genome Res. September 2007 17: 1245-1253; Published in Advance August 9, 2007, doi:10.1101/gr.6406307
    ...). Innovation and rapid evolution is also evident in thousands of gene regulatory sequences, which cover extended genomic regions and exhibit rapid turnover ( Smith et al. 2004 ; Fisher et al. 2006 ; Frith et al. 2006 ; Taylor et al. 2006 ). This includes the remarkable functional conservation of regulatory...
  7. PERSPECTIVE: Origin of phenotypes: Genes and transcripts
    • Thomas R. Gingeras
    Genome Res. June 2007 17: 682-690; doi:10.1101/gr.6525007
    ...). Furthermore, the large noncoding RNA, XIST, is essential for sex chromosome dosage compensation in mammals, and yet exhibits rapid evolution of primary sequences despite an overall conservation of gene structure and organization ( Nesterova et al. 2001 ). Third, noncoding transcripts may adopt secondary...
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