Searching journal content for articles similar to Ness et al. 25 (11): 1739.

Displaying results 1-10 of 14

For checked items

view abstracts
download to citation manager

Select this article
Research: Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
- Eugenio López-Cortegano,
- Rory J. Craig,
- Jobran Chebib,
- Eniolaye J. Balogun,
- and Peter D. Keightley
Genome Res. January 2023 33: 45-60; Published in Advance December 12, 2022, doi:10.1101/gr.276957.122
...for the discovery of structural variation (Rhoads and Au 2015; Jain et al. 2018; Mahmoud et al. 2019; Miga et al. 2020; De Coster et al. 2021). These advances now enable the study of the complete spectra of SMs in MA lines. The single-celled green alga Chlamydomonas reinhardtii is an excellent model for mutation...
OPEN ACCESS ARTICLE
Select this article
Research: Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii
- Frédéric Chaux,
- Nicolas Agier,
- Clotilde Garrido,
- Gilles Fischer,
- Stephan Eberhard,
- and Zhou Xu
Genome Res. September 2023 33: 1582-1598; Published in Advance August 14, 2023, doi:10.1101/gr.278043.123
.... The landscape of the ensuing rearrangements is not accessible by short-read sequencing. Here, we leverage Oxford Nanopore Technologies long-read sequencing to survey the extensive repertoire of rearrangements in telomerase mutants of the model green microalga Chlamydomonas reinhardtii. In telomerase...
OPEN ACCESS ARTICLE
Select this article
Research: Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans
- Yiguan Wang,
- Paul McNeil,
- Rashidatu Abdulazeez,
- Marta Pascual,
- Susan E. Johnston,
- Peter D. Keightley,
- and Darren J. Obbard
Genome Res. April 2023 33: 587-598; Published in Advance April 10, 2023, doi:10.1101/gr.277383.122
...of this variation is fundamental for parameterizing models of evolution. Here, we provide direct estimates of mutation, recombination, and transposition rates and their variation in a West African and a European population of D. melanogaster and a European population of D. simulans. Across 89 flies, we observe 58...
OPEN ACCESS ARTICLE
Select this article
Research: Direct estimate of the rate of germline mutation in a bird
- Linnéa Smeds,
- Anna Qvarnström,
- and Hans Ellegren
Genome Res. September 2016 26: 1211-1218; Published in Advance July 13, 2016, doi:10.1101/gr.204669.116
...evolution of genes in avian s. Genome Biol 11: R68. Ness RW, Morgan AD, Vasanthakrishnan RB, Colegrave N, Keightley PD. 2015. Extensive de novo mutation rate variation between individuals and across the of Chlamydomonas reinhardtii. Genome Res 25: 1739–1749. Ossowski S, Schneeberger K, Lucas-Lledó JI...
OPEN ACCESS ARTICLE
Select this article
Research: Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control
- Todd P. Michael,
- Evan Ernst,
- Nolan Hartwick,
- Philomena Chu,
- Douglas Bryant,
- Sarah Gilbert,
- Stefan Ortleb,
- Erin L. Baggs,
- K. Sowjanya Sree,
- Klaus J. Appenroth,
- Joerg Fuchs,
- Florian Jupe,
- Justin P. Sandoval,
- Ksenia V. Krasileva,
- Ljudmylla Borisjuk,
- Todd C. Mockler,
- Joseph R. Ecker,
- Robert A. Martienssen,
- and Eric Lam
Genome Res. February 2021 31: 225-238; Published in Advance December 23, 2020, doi:10.1101/gr.266429.120
...et al. 2010). Similarly, the model microalga Chlamydomonas reinhardtii has a core circadian clock and 80% of its genes cycle in a TOD fashion (Zones et al. 2015). In contrast, multicellular, multiorgan plants tested under the LDHH condition have a higher number of cycling genes, such as Arabidopsis...
OPEN ACCESS ARTICLE
Select this article
Research: The rate and spectrum of new mutations in mice inferred by long-read sequencing
- Eugenio López-Cortegano,
- Jobran Chebib,
- Anika Jonas,
- Anastasia Vock,
- Sven Künzel,
- Peter D. Keightley,
- and Diethard Tautz
Genome Res. January 2025 35: 43-54; Published in Advance December 2, 2024, doi:10.1101/gr.279982.124
...for Evolutionary Biology, 24306 Plön, Germany Corresponding author: elcortegano@protonmail.comAbstractAll forms of genetic variation originate from new mutations, making it crucial to understand their rates and mechanisms. Here, we use long-read sequencing from Pacific Biosciences (PacBio) to investigate de novo...
OPEN ACCESS ARTICLE
Select this article
Research: Genome scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin-resistant parasites
- Neekesh V. Dharia,
- David Plouffe,
- Selina E.R. Bopp,
- Gonzalo E. González-Páez,
- Carmen Lucas,
- Carola Salas,
- Valeria Soberon,
- Badry Bursulaya,
- Tadeusz J. Kochel,
- David J. Bacon,
- and Elizabeth A. Winzeler
Genome Res. November 2010 20: 1534-1544; Published in Advance September 9, 2010, doi:10.1101/gr.105163.110
.... Mutations are underscored. Dharia et al. 1536 Genome Research www..org Indeed, previous work has shown that up to 90% of the existing variation in unique coding regions can be detected using our array (Dharia et al. 2009), and this array has been used to successfully discover newly emerged SNPS in the P...
Select this article
Research: Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa
- Mariana Villalba de la Peña,
- Pauliina A.M. Summanen,
- Martta Liukkonen,
- and Ilkka Kronholm
Genome Res. April 2023 33: 599-611; Published in Advance March 15, 2023, doi:10.1101/gr.276992.122
...based on indirect inference from species divergence and polymorphism (Washietl et al. 2008; Sasaki et al. 2009; Ying et al. 2010). We observed directly extensive variation across the in the mutation rate and mutation spectra owing to chromatin modifications. In N. crassa, H3K9 trimethylation determines...
OPEN ACCESS ARTICLE
Select this article
Review: The structure, function, and evolution of plant centromeres
- Matthew Naish and
- Ian R. Henderson
Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
...positioning of chromosomes during cell division and breakage owing to shearing or mechanical stresses. Genome elimination has been achieved by crossing lines carrying point CENH3 mutations in Arabidopsis (Karimi-Ashtiyani et al. 2015; Kuppu et al. 2015), by -editing to produce frameshifts in CENH3 tail...
OPEN ACCESS ARTICLE
Select this article
Research: Accelerated rates of large-scale mutations in the presence of copper and nickel
- Frédéric J.J. Chain,
- Jullien M. Flynn,
- James K. Bull,
- and Melania E. Cristescu
Genome Res. January 2019 29: 64-73; Published in Advance November 28, 2018, doi:10.1101/gr.234724.118
...in offspring after parent irradiation (Adewoye et al. 2015). Even scarcer are genomic approaches that utilize MA experiments to assess the variation in mutation rates across environments after multiple generations. MA experiments have revealed that a stressful high temperature increased the rate of short...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Ness et al. 25 (11): 1739.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: