Searching journal content for articles similar to Nechiporuk et al. 9 (12): 1231.

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  1. Research: MHC in newts illuminates the evolutionary dynamics of complex regions in giant genomes
    • Wiesław Babik,
    • Katarzyna Dudek,
    • Gemma Palomar,
    • Marzena Marszałek,
    • Grzegorz Dubin,
    • Maximina H. Yun,
    • and Magdalena Migalska
    Genome Res. February 2026 36: 303-317; Published in Advance January 12, 2026, doi:10.1101/gr.281127.125
    ...understood. Here, we use comparative genomics, expression across multiple ontogenetic stages and tissues, as well as polymorphism data to investigate MHC evolution in newts. Contrary to earlier suggestions of a massively expanded MHC in salamanders, we find that the core MHC region remains relatively compact...
  2. Research: Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region
    • Cemalettin Bekpen,
    • Ibrahim Tastekin,
    • Priscillia Siswara,
    • Cezmi A. Akdis,
    • and Evan E. Eichler
    Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111
    ...Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region Cemalettin Bekpen 1 , 2 , 5 , Ibrahim Tastekin 2 , Priscillia Siswara 3 , Cezmi A. Akdis 1 and Evan E...
  3. Method: Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair
    • Thomas O. Auer,
    • Karine Duroure,
    • Anne De Cian,
    • Jean-Paul Concordet,
    • and Filippo Del Bene
    Genome Res. January 2014 24: 142-153; Published in Advance October 31, 2013, doi:10.1101/gr.161638.113
    ...Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair Thomas O. Auer 1 , 2 , 3 , 4 , Karine Duroure 1 , 2 , 3 , Anne De Cian 5 , 6 , 7 , Jean-Paul Concordet 5 , 6 , 7 , 8 and Filippo...
  4. Research: The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores
    • Yulong Liu,
    • Gang Zhai,
    • Jingzhi Su,
    • Yulong Gong,
    • Bingyuan Yang,
    • Qisheng Lu,
    • Longwei Xi,
    • Yutong Zheng,
    • Jingyue Cao,
    • Haokun Liu,
    • Junyan Jin,
    • Zhimin Zhang,
    • Yunxia Yang,
    • Xiaoming Zhu,
    • Zhongwei Wang,
    • Gaorui Gong,
    • Jie Mei,
    • Zhan Yin,
    • Rodolphe E. Gozlan,
    • Shouqi Xie,
    • and Dong Han
    Genome Res. July 2024 34: 981-996; Published in Advance August 9, 2024, doi:10.1101/gr.278476.123
    ..., but that did not work well in examining the Tas1r3 in zebrafish. Despite this, the feeding preference phenotype exhibited by tas1r3-deficient fish is specific, as assessed by the zebrafish in a double-blind feeding experiment. Collectively, we think that these feeding behavior experiments of tas1r3-deficient...
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  5. LETTER: Genetic variation in the zebrafish
    • Victor Guryev,
    • Marco J. Koudijs,
    • Eugene Berezikov,
    • Stephen L. Johnson,
    • Ronald H.A. Plasterk,
    • Fredericus J.M. van Eeden,
    • and Edwin Cuppen
    Genome Res. April 2006 16: 491-497; Published in Advance March 13, 2006, doi:10.1101/gr.4791006
    ...in Drosophila. Mol. Biol. Evol. 13 : 261 – 277 . ↵ Nechiporuk A. , Finney J.E. , Keating M.T. , Johnson S.L. ( 1999 ) Assessment of polymorphism in zebrafish mapping strains. Genome Res. 9 : 1231 – 1238 . ↵ Nickerson D.A. , Tobe V.O. , Taylor S.L. ( 1997 ) Polyphred: Automating the detection and genotyping...
  6. LETTER: Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias
    • Mikael Brandström and
    • Hans Ellegren
    Genome Res. June 2008 18: 881-887; Published in Advance March 20, 2008, doi:10.1101/gr.075242.107
    ...Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias Mikael Brandström and Hans Ellegren 1 Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala...
  7. Research: Age-dependent mutational loads in human tRNA genes are tumor-specific and result in chimeric tRNA sequences that could disrupt the genetic code
    • Marina Murillo,
    • Marina Salvadores,
    • Aina Vaquer Picó,
    • Lina Tsapanou,
    • Adrian Gabriel Torres,
    • Fran Supek,
    • and Lluis Ribas de Pouplana
    Genome Res. April 15, 2026 gr.281022.125; Published in Advance April 15, 2026, doi:10.1101/gr.281022.125
    ...DNAs were categorized as isolated (Supplemental Fig. S1B and 381 Supplemental Table S1). The correlation between POLR3D and biotin-capture was assessed using the 382 Spearman’s correlation coefficient (r). Statistical differences in log2 integrated tDNA expression levels 383 between clustered and isolated t...
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  8. Research: Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species
    • Daniel Siqueira de Oliveira,
    • Anaïs Larue,
    • William Vilas Boas Nunes,
    • Francois Sabot,
    • Alejandra Bodelón,
    • María Pilar García Guerreiro,
    • Cristina Vieira,
    • and Claudia Marcia Aparecida Carareto
    Genome Res. March 2026 36: 487-505; Published in Advance February 10, 2026, doi:10.1101/gr.280463.125
    ...history traits (Etges 1993), behavior (Crowley-Gall et al. 2016), and genomic and transcriptomic differences (Matzkin and Markow 2013; Rajpurohit et al. 2013; Benowitz et al. 2020, 2024; De Panis et al. 2022). However, the contribution of TEs to the evolution of HLAU genes has not yet been assessed. Here...
  9. Research: Optical genome mapping identifies rare structural variants in neural tube defects
    • Nikhil S. Sahajpal,
    • Jane Dean,
    • Benjamin Hilton,
    • Timothy Fee,
    • Cindy Skinner,
    • Alex Hastie,
    • Barbara R. DuPont,
    • Alka Chaubey,
    • Michael J. Friez,
    • and Roger E. Stevenson
    Genome Res. April 2025 35: 798-809; Published in Advance March 19, 2025, doi:10.1101/gr.279318.124
    ...and have been implicated in evolutionary processes, human health, and disease (Eichler 2019; Levy-Sakin et al. 2019). However, this contribution is underestimated, primarily due to the limitation of the available technologies used to assess SVs in the human population and rare disorders, including NTDs...
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  10. Research: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
    • Kang Du,
    • Oliver Deusch,
    • Ilja Bezrukov,
    • Christa Lanz,
    • Yann Guiguen,
    • Margarete Hoffmann,
    • Anette Habring,
    • Detlef Weigel,
    • Manfred Schartl,
    • and Christine Dreyer
    Genome Res. March 2025 35: 489-498; Published in Advance March 5, 2025, doi:10.1101/gr.279582.124
    ...Poecilia wingei and Poecilia obscura (Nanda et al. 2014). This analysis revealed polymorphisms in heterochromatin content of the Y as well as differences in distance of the genetic marker M_229 to the physical chromosome end between populations. The sex determination locus (SDL) was mapped to the most...
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