Searching journal content for articles similar to Natarajan et al. 3 (6): 346.

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  1. Research: Integration site-dependent HIV-1 promoter activity shapes host chromatin conformation
    • Jack A. Collora and
    • Ya-Chi Ho
    Genome Res. June 9, 2023 gr.277698.123; Published in Advance June 9, 2023, doi:10.1101/gr.277698.123
    ...the 22 impact of HIV-1 promoter activity on host chromatin accessibility downstream of the integration site, we used 23 sgRNA targeting HIV-1 promoter versus nontargeting controls (NT) with CRISPR-activation (CRISPRa) and 24 CRISPR-inhibition (CRISPRi) cell line clones. We examined whether activation...
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  2. LETTER: Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses
    • David A. Wright and
    • Daniel F. Voytas
    Genome Res. January 1, 2002 12: 122-131; Published in Advance December 14, 2001, doi:10.1101/gr.196001
    ...with a predicted central transmembrane domain, similar to retroviral env genes. RNA of Athila elements was detected in an A. thaliana strain with decreased DNA methylation ( ddm1 ). Additionally, a PCR survey identified related reverse transcriptases in diverse angiosperm genomes. Their ubiquitous nature...
  3. ARTICLE: Retroviruses and yeast retrotransposons use overlapping sets of host genes
    • Becky Irwin,
    • Michael Aye,
    • Pierre Baldi,
    • Nadejda Beliakova-Bethell,
    • Henry Cheng,
    • Yimeng Dou,
    • Willy Liou,
    • and Suzanne Sandmeyer
    Genome Res. May 2005 15: 641-654; Published in Advance April 18, 2005, doi:10.1101/gr.3739005
    ...and membranes are important for replication of many different types of viruses. Moloney murine leukemia virus genomic RNA, together with Gag and Gag-Pol, is trafficked through the endosomal system to the plasma membrane ( Basyuk et al. 2003 ), and Type-D retroviruses, which assemble at perinuclear sites, use...
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  4. LETTER: An infectious progenitor for the murine IAP retrotransposon: Emergence of an intracellular genetic parasite from an ancient retrovirus
    • David Ribet,
    • Francis Harper,
    • Anne Dupressoir,
    • Marie Dewannieux,
    • Gérard Pierron,
    • and Thierry Heidmann
    Genome Res. April 2008 18: 597-609; Published in Advance February 6, 2008, doi:10.1101/gr.073486.107
    ...subgenomic transcripts (2 and 3) were determined by sequencing the RT-PCR products obtained using total RNAs and the two sets of primers indicated. ( B ) Northern blot analysis of total RNA extracted from 293T cells transfected with pCMV-β (ctrl) or the IAPE-D1 expression vector (IAPE), using a probe (shown...
  5. ARTICLE: Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay.
    • E L Delwart,
    • B Herring,
    • A G Rodrigo,
    • and J I Mullins
    Genome Res. April 1995 4: S202-S216
    ...subtype determination. (zS) Results ob- tained using HMA, RNase A cleavage of RNA/DNA heteroduplexes, (29,3~ and anchored primer PCR (3L32) were then compared with results from DNA se- quencing. All 54 isolates for which DNA sequence information was available were subtyped correctly by HMA, (33...
  6. LETTER: Widespread balancing selection and pathogen-driven selection at blood group antigen genes
    • Matteo Fumagalli,
    • Rachele Cagliani,
    • Uberto Pozzoli,
    • Stefania Riva,
    • Giacomo P. Comi,
    • Giorgia Menozzi,
    • Nereo Bresolin,
    • and Manuela Sironi
    Genome Res. February 2009 19: 199-212; Published in Advance November 7, 2008, doi:10.1101/gr.082768.108
    .... Conversely, a search for microRNA target sites (miRBase) indicated that one variant, namely rs1130698, falls within the highest scoring predicted target site. In particular the T allele changes a G–C pairing between the CD151 UTR sequence and hsa-miR-940 to a G–U wobble; unfortunately, little is known about...
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