Searching journal content for articles similar to Nasidze et al. 19 (4): 636.

Displaying results 1-8 of 8

For checked items

view abstracts
download to citation manager

Select this article
Research: Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
- Jonathon L. Baker,
- James T. Morton,
- Márcia Dinis,
- Ruth Alvarez,
- Nini C. Tran,
- Rob Knight,
- and Anna Edlund
Genome Res. January 2021 31: 64-74; Published in Advance November 25, 2020, doi:10.1101/gr.265645.120
...microbiome at an unprecedented resolution and contributed several leads for further study that will increase the understanding of caries pathogenesis and guide therapeutic development.Dental caries, the most prevalent chronic infectious disease globally, is caused by a dysbiotic oral microbiota that creates...
Select this article
Research: Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood
- Simone S. Stahringer,
- Jose C. Clemente,
- Robin P. Corley,
- John Hewitt,
- Dan Knights,
- William A. Walters,
- Rob Knight,
- and Kenneth S. Krauter
Genome Res. November 2012 22: 2146-2152; Published in Advance October 12, 2012, doi:10.1101/gr.140608.112
.... 2011. The human oral meta. In Metagenomics of the human body (ed. KENelson), Chapter 9, pp. 165–173. Springer, New York. Nasidze I, Li J, Quinque D, Tang K, Stoneking M. 2009. Global diversity in the human salivary microbiome. Genome Res 19: 636–643. Papaioannou W, Gizani S, Haffajee AD, Quirynen M...
Select this article
Next-Generation DNA Sequencing/Review: Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
- Micah Hamady and
- Rob Knight
Genome Res. July 2009 19: 1141-1152; Published in Advance April 21, 2009, doi:10.1101/gr.085464.108
...Microbial community profiling for human microbiome projects: Tools, techniques, and challenges Micah Hamady 1 and Rob Knight 2 , 3 1 Department of Computer Science, University of Colorado, Boulder, Colorado 80309, USA; 2 Department...
Select this article
Resource: An 11-point time course midgut transcriptome across 72 h after bloodfeeding provides detailed temporal resolution of transcript expression in the arbovirus vector, Aedes aegypti
- Hitoshi Tsujimoto and
- Zach N. Adelman
Genome Res. September 2023 33: 1638-1648; Published in Advance October 6, 2023, doi:10.1101/gr.277808.123
..., and disseminate throughout the body of the mosquito, including the salivary glands from which the pathogens will be injected into a new vertebrate host at the next bloodfeeding. Thus, the female midgut is one of the most important organs in a mosquito as the center for bloodmeal digestion, which is directly...
Select this article
Research: Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
- Huixin Xu,
- Qi Zhen,
- Mingzhou Bai,
- Lin Fang,
- Yong Zhang,
- Bao Li,
- Huiyao Ge,
- Sunjin Moon,
- Weiwei Chen,
- Wenqing Fu,
- Qiongqiong Xu,
- Yuwen Zhou,
- Yafeng Yu,
- Long Lin,
- Liang Yong,
- Tao Zhang,
- Shirui Chen,
- Siyang Liu,
- Hui Zhang,
- Ruoyan Chen,
- Lu Cao,
- Yuanwei Zhang,
- Ruixue Zhang,
- Huanjie Yang,
- Xia Hu,
- Joshua M. Akey,
- Xin Jin,
- and Liangdan Sun
Genome Res. July 2021 31: 1150-1158; Published in Advance June 21, 2021, doi:10.1101/gr.267963.120
...changes in energy metabolism in the gut microbiome (Tong et al. 2014; Galinsky et al. 2016). This SNP is also a very strong expression quantitative trait locus (eQTL) for expression in the esophagus, pancreas, skin, stomach, colon, pituitary, brain, and minor salivary gland in the GTEx data (Karlsson et...
Select this article
Research: Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
- David T. Pride,
- Christine L. Sun,
- Julia Salzman,
- Nitya Rao,
- Peter Loomer,
- Gary C. Armitage,
- Jillian F. Banfield,
- and David A. Relman
Genome Res. January 2011 21: 126-136; Published in Advance December 13, 2010, doi:10.1101/gr.111732.110
...repeat and spacer sequences from the human salivary microbiome We recruited four subjects with good periodontal health and obtained saliva samples from February 2008 to July 2009 (Supplemental Table 1). No specific intervention took place during this 17-mo study period, and all subjects were sampledon...
Select this article
Method: Biome representational in silico karyotyping
- Valliammai Muthappan,
- Aaron Y. Lee,
- Tamara L. Lamprecht,
- Lakshmi Akileswaran,
- Suzanne M. Dintzis,
- Choli Lee,
- Vincent Magrini,
- Elaine R. Mardis,
- Jay Shendure,
- and Russell N. Van Gelder
Genome Res. April 2011 21: 626-633; Published in Advance February 10, 2011, doi:10.1101/gr.115758.110
...amplification of DNA from buccal epithelial cells. Twin Res 7: 482–484. Nasidze I, Li J, Quinque D, Tang K, Stoneking M. 2009a. Global diversity in the human salivary microbiome. Genome Res 19: 636–643. Nasidze I, Quinque D, Li J, Li M, Tang K, Stoneking M. 2009b. Comparative analysis of human saliva microbiome...
Select this article
Method: Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture
- Helena M.B. Seth-Smith,
- Simon R. Harris,
- Rachel J. Skilton,
- Frans M. Radebe,
- Daniel Golparian,
- Elena Shipitsyna,
- Pham Thanh Duy,
- Paul Scott,
- Lesley T. Cutcliffe,
- Colette O’Neill,
- Surendra Parmar,
- Rachel Pitt,
- Stephen Baker,
- Catherine A. Ison,
- Peter Marsh,
- Hamid Jalal,
- David A. Lewis,
- Magnus Unemo,
- Ian N. Clarke,
- Julian Parkhill,
- and Nicholas R. Thomson
Genome Res. May 2013 23: 855-866; Published in Advance March 22, 2013, doi:10.1101/gr.150037.112
...archived samples. This method will prove a useful tool in answering questions relating to the biology of many difficult-to-culture or fastidious bacteria of clinical concern. [Supplemental material is available for this article.] Chlamydia trachomatis is a pathogen of global importance as the most...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Nasidze et al. 19 (4): 636.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: