Searching journal content for articles similar to Nakagawa et al. 13 (6a): 1042.

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  1. Method: Fast and flexible bacterial genomic epidemiology with PopPUNK
    • John A. Lees,
    • Simon R. Harris,
    • Gerry Tonkin-Hill,
    • Rebecca A. Gladstone,
    • Stephanie W. Lo,
    • Jeffrey N. Weiser,
    • Jukka Corander,
    • Stephen D. Bentley,
    • and Nicholas J. Croucher
    Genome Res. February 2019 29: 304-316; Published in Advance January 24, 2019, doi:10.1101/gr.241455.118
    ...demarcation of the within-strain links. Streptococcus pyogenes exhibits low within-strain recombination; hence, it has a dense cluster of points near the origin of the graph, but high between-strain divergence, resulting in the single, broad between-strain set of points. Network score fit refinement...
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  2. Methods: Inferring genomic flux in bacteria
    • Xavier Didelot,
    • Aaron Darling,
    • and Daniel Falush
    Genome Res. February 2009 19: 306-317; Published in Advance November 17, 2008, doi:10.1101/gr.082263.108
    ....C. , Porcella, S.F. , Parkins, L.D. , et al. ( 2002 ) Genome sequence of a serotype M3 strain of group A Streptococcus : Phage-encoded toxins, the high-virulence phenotype, and clone emergence . Proc. Natl. Acad. Sci. 99 : 10078 – 10083 . ↵ Beres, S.B. , Richter, E.W. , Nagiec, M.J. , Sumby, P. , Porcella, S...
  3. ARTICLE: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
    • Wei Qian,
    • Yantao Jia,
    • Shuang-Xi Ren,
    • Yong-Qiang He,
    • Jia-Xun Feng,
    • Ling-Feng Lu,
    • Qihong Sun,
    • Ge Ying,
    • Dong-Jie Tang,
    • Hua Tang,
    • Wei Wu,
    • Pei Hao,
    • Lifeng Wang,
    • Bo-Le Jiang,
    • Shenyan Zeng,
    • Wen-Yi Gu,
    • Gang Lu,
    • Li Rong,
    • Yingchuan Tian,
    • Zhijian Yao,
    • Gang Fu,
    • Baoshan Chen,
    • Rongxiang Fang,
    • Boqin Qiang,
    • Zhu Chen,
    • Guo-Ping Zhao,
    • Ji-Liang Tang,
    • and Chaozu He
    Genome Res. June 2005 15: 757-767; Published in Advance May 17, 2005, doi:10.1101/gr.3378705
    ...and strain-specific genes therein (insertion and deletion), which may or may not be associated with the large-scale rearrangement process, are of particular interest. As far as Xcc ATCC 33913 was concerned, the majority of strain-specific CDSs in its chromosomal segment G are phage related (Supplemental...
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