Searching journal content for articles similar to Nagashima et al. 13 (6b): 1520.

Displaying results 1-10 of 40

For checked items

view abstracts
download to citation manager

Select this article
ARTICLE: Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- Piero Carninci,
- Kazunori Waki,
- Toshiyuki Shiraki,
- Hideaki Konno,
- Kazuhiro Shibata,
- Masayoshi Itoh,
- Katsunori Aizawa,
- Takahiro Arakawa,
- Yoshiyuki Ishii,
- Daisuke Sasaki,
- Hidemasa Bono,
- Shinji Kondo,
- Yuichi Sugahara,
- Rintaro Saito,
- Naoki Osato,
- Shiro Fukuda,
- Kenjiro Sato,
- Akira Watahiki,
- Tomoko Hirozane-Kishikawa,
- Mari Nakamura,
- Yuko Shibata,
- Ayako Yasunishi,
- Noriko Kikuchi,
- Atsushi Yoshiki,
- Moriaki Kusakabe,
- Stefano Gustincich,
- Kirk Beisel,
- William Pavan,
- Vassilis Aidinis,
- Akira Nakagawara,
- William A. Held,
- Hiroo Iwata,
- Tomohiro Kono,
- Hiromitsu Nakauchi,
- Paul Lyons,
- Christine Wells,
- David A. Hume,
- Michela Fagiolini,
- Takao K. Hensch,
- Michelle Brinkmeier,
- Sally Camper,
- Junji Hirota,
- Peter Mombaerts,
- Masami Muramatsu,
- Yasushi Okazaki,
- Jun Kawai,
- and Yoshihide Hayashizaki
Genome Res. June 2003 13: 1273-1289; doi:10.1101/gr.1119703
...Developmental Biology and Neurogenetics, The Rockefeller University, New York, New York 10021, USA Abstract We report the construction of the mouse full-length cDNA encyclopedia,the most extensive view of a complex transcriptome,on the basis of preparing and sequencing 246 libraries. Before cloning,cDNAs were...
Select this article
RESOURCE: Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
- Hiromi Kochiwa,
- Ryosuke Suzuki,
- Takanori Washio,
- Rintaro Saito,
- The RIKEN Genome Exploration Research Group Phase, II Team,
- Hidemasa Bono,
- Piero Carninci,
- Yasushi Okazaki,
- Rika Miki,
- Yoshihide Hayashizaki,
- and Masaru Tomita
Genome Res. August 1, 2002 12: 1286-1293; Published in Advance July 19, 2002, doi:10.1101/gr.220302
...Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data Hiromi Kochiwa 1 , 3 , Ryosuke Suzuki 1 , 3 , Takanori Washio 3 , Rintaro Saito 4 , The RIKEN Genome Exploration Research Group Phase, II Team...
Select this article

RESOURCE: The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) Genome Res. October 15, 2004 14: 2121-2127; doi:10.1101/gr.2596504

...://image.llnl.gov/image/html/vectors.shtml . The catalog of the cDNA libraries resulting in full-length MGC clones can also be found at the Web sites. Library Characterization, Screening, Selection of Full-ORF Candidate Clones, and Sequencing The core methods have been previously described ( Strausberg et al. 2002b ). Recent modifications...
Select this article
LETTER: Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
- Hidemasa Bono,
- Ken Yagi,
- Takeya Kasukawa,
- Itoshi Nikaido,
- Naoko Tominaga,
- Rika Miki,
- Yosuke Mizuno,
- Yasuhiro Tomaru,
- Hitoshi Goto,
- Hiroyuki Nitanda,
- Daisuke Shimizu,
- Hirochika Makino,
- Tomoyuki Morita,
- Junshin Fujiyama,
- Takehito Sakai,
- Takashi Shimoji,
- David A. Hume,
- RIKEN GER Group,
- GSL Members,
- Yoshihide Hayashizaki,
- and Yasushi Okazaki
Genome Res. June 2003 13: 1318-1323; doi:10.1101/gr.1075103
...that a transcript is an artifact, or unprocessed nuclear RNA. Expression in a particular tissue may also give insights into likely function for annotated proteins in which the only information available is the presence of a conserved domain or motif. Following the acquisition of RIKEN mouse full-length cDNAs, we...
Select this article
LETTER: Splice Variation in Mouse Full-Length cDNAs Identified by Mapping to the Mouse Genome
- Mihaela Zavolan,
- Erik van Nimwegen,
- and Terry Gaasterland
Genome Res. September 1, 2002 12: 1377-1385; doi:10.1101/gr.191702
..., The Rockefeller University, New York, New York 10021, USA Abstract We mapped the collection of The Institute of Physical and Chemical Research (Japan) (RIKEN) 21,076 full-length mouse cDNA clone sequences and the mouse RefSeq sequences to the recently completed draft of the mouse genome. Using...
Select this article
Abstracts: Exon Structure Analysis, Ortholog Identification, and SNP Candidate Screening by Mapping Mouse RIKEN Sequences to Multiple Genome Assemblies
- Serge Batalov and
- Colin F. Fletcher
Genome Res. June 2003 13: 1552-1553; doi:10.1101/gr.1458903
.... For this investigation, the expression profile of an intronless clone can be very informative ( Su et al. 2002 ). This analysis also allows us to roughly compare the completeness of the assemblies. Of 60,172 RIKEN cDNAs containing &gt;100 non-masked bases, &gt;99% were mapped at &gt;70% length to both latest assemblies...
Select this article
LETTER: Exploration of the Cell-Cycle Genes Found Within the RIKEN FANTOM2 Data Set
- Alistair R.R. Forrest,
- Darrin Taylor,
- RIKEN GER Group,
- GSL Members,
- and Sean Grimmond
Genome Res. June 2003 13: 1366-1375; doi:10.1101/gr.1012403
...are nonredundant sequences identified by the RIKEN RTPS group; these attempt to merge all publicly available, high-quality EST sequences with the RIKEN FANTOM2 sequences. The corresponding cDNA and protein sequences are referred to as the RTS (representative transcript set), RPS (representative protein set...
Select this article
LETTER: Exploration of Novel Motifs Derived from Mouse cDNA Sequences
- Hideya Kawaji,
- Christian Schönbach,
- Yo Matsuo,
- Jun Kawai,
- Yasushi Okazaki,
- Yoshihide Hayashizaki,
- and Hideo Matsuda
Genome Res. March 1, 2002 12: 367-378; Published in Advance February 15, 2002, doi:10.1101/gr.193702
...as threshold for a novel motif. Here we have chosen a systematic linkage clustering based on sequence similarity, followed by visual inspection, sequence, topological, and literature analysis of the motif candidates to explore new motifs derived from 21,076 mouse cDNA clones ( RIKEN Genome Exploration Research...
Select this article
RESOURCE: Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System
- Takeya Kasukawa,
- Masaaki Furuno,
- Itoshi Nikaido,
- Hidemasa Bono,
- David A. Hume,
- Carol Bult,
- David P. Hill,
- Richard Baldarelli,
- Julian Gough,
- Alexander Kanapin,
- Hideo Matsuda,
- Lynn M. Schriml,
- Yoshihide Hayashizaki,
- Yasushi Okazaki,
- and John Quackenbush
Genome Res. June 2003 13: 1542-1551; doi:10.1101/gr.992803
...annotation was “inferred: RIKEN cDNA 0610016J10 gene/HYPOTHETICAL PROTEIN CGI-27 [Human] [Homo sapiens],” whereas automated annotation was “unknown EST”. Examination of the evidence suggests that the clone sequence is homologous to the 3′ UTR of a hypothetical human protein coding sequence based on the Uni...
Select this article
Method: High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- Philippe Batut,
- Alexander Dobin,
- Charles Plessy,
- Piero Carninci,
- and Thomas R. Gingeras
Genome Res. January 2013 23: 169-180; Published in Advance August 30, 2012, doi:10.1101/gr.139618.112
...platforms with minimal alterations. This is particularly attractive as new technologies yielding greater read lengths will allow us to move toward large-scale, full-length cDNA sequencing. We measured promoter activity throughout the life cycle of D.melanogaster, thus providing a high-quality reference data...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Nagashima et al. 13 (6b): 1520.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: