Searching journal content for articles similar to Naftaly et al. 31 (8): 1486.

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  1. Perspective: Challenges in identifying mRNA transcript starts and ends from long-read sequencing data
    • Ezequiel Calvo-Roitberg,
    • Rachel F. Daniels,
    • and Athma A. Pai
    Genome Res. November 2024 34: 1719-1734; doi:10.1101/gr.279559.124
    ...alternative transcript starts (TSSs) and ends (PASs), leading to different isoforms expressed from the same gene with variable cellular consequences. (B) Representative example of long-read RNA sequencing reads for CDC42 in K562 cells. To aid visualization, 280 randomly sampled reads from each sequencing...
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  2. Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
    • Wenyu Zhang,
    • Anja Guenther,
    • Yuanxiao Gao,
    • Kristian Ullrich,
    • Bruno Huettel,
    • Aftab Ahmad,
    • Lei Duan,
    • Kaizong Wei,
    • and Diethard Tautz
    Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
    ...they are transcribed or the special structures of their RNAs. However, we consider the set of high-confidence isoforms to be at least highly enriched in variants that are not simply generated by errors in the splicing machinery.Alternative isoforms as population differentiation markersGiven the high and comparable...
  3. Research: Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish
    • Amaury Herpin,
    • Manfred Schartl,
    • Alexandra Depincé,
    • Yann Guiguen,
    • Julien Bobe,
    • Aurélie Hua-Van,
    • Edward S. Hayman,
    • Anna Octavera,
    • Goro Yoshizaki,
    • Krista M. Nichols,
    • Giles W. Goetz,
    • and J. Adam Luckenbach
    Genome Res. August 2021 31: 1366-1380; Published in Advance June 28, 2021, doi:10.1101/gr.274266.120
    ...-length sablefish gsdfX and gsdfY mRNAs, including polymorphisms and alternative poly-adenylation sites. (CDS) Coding sequence, (UTR) untranslated region, (SNP) single nucleotide polymorphism. (B) PCR amplification of gsdfX and gsdfY on X and Y Chromosomes, respectively, based on specific inserts upstream...
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