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Resource: Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- Andrea Pauli,
- Eivind Valen,
- Michael F. Lin,
- Manuel Garber,
- Nadine L. Vastenhouw,
- Joshua Z. Levin,
- Lin Fan,
- Albin Sandelin,
- John L. Rinn,
- Aviv Regev,
- and Alexander F. Schier
Genome Res. March 2012 22: 577-591; Published in Advance November 22, 2011, doi:10.1101/gr.133009.111
...), we annotated and analyzed lncRNAs at high temporal resolution. We combined RNA-seq–based de novo transcript identification with a stringent filtering of putative protein-coding transcripts to define a high-confidence set of 1133 multi-exonic noncoding transcripts. Our lncRNA catalog includes 397...
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Resource: Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis
- Yingshu Li,
- Yongjie Liu,
- Hang Yang,
- Ting Zhang,
- Kiyoshi Naruse,
- and Qiang Tu
Genome Res. June 2020 30: 924-937; Published in Advance June 26, 2020, doi:10.1101/gr.258871.119
...three families encoded in the human .LncRNAs are a heterogeneous class of RNAs longer than 200 nucleotides. They are often 5′-capped, spliced, and polyadenylated. However, they lack protein-coding potential and are not translated into proteins. The functions of the majority of lncRNAs are unknown...
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