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Mini-Review: Toward telomere-to-telomere cat genomes for precision medicine and conservation biology
- William J. Murphy and
- Andrew J. Harris
Genome Res. May 2024 34: 655-664; Published in Advance June 7, 2024, doi:10.1101/gr.278546.123
..., and clarify the coherence of organization. We describe how interspecies hybrids have been instrumental in the genetic analysis of cats, from the first genetic maps to propelling cat s toward the T2T standard set by the human project. Genotype-to-phenotype mapping in cat models has revealed dozens of health...
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Research: Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
- Wesley A. Brashear,
- Terje Raudsepp,
- and William J. Murphy
Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
...ampliconic sequence dispersed across the domestic cat Y Chromosome, and identified the major ampliconic gene families and repeat units. We analyzed fluorescence in situ hybridization, qPCR, and whole- sequence data from 20 cat species and revealed that ampliconic gene families are conserved across the cat...
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Research: Genomic architecture constrained placental mammal X Chromosome evolution
- Wesley A. Brashear,
- Kevin R. Bredemeyer,
- and William J. Murphy
Genome Res. August 2021 31: 1353-1365; Published in Advance July 22, 2021, doi:10.1101/gr.275274.121
...from an F1 domestic cat/Asian leopard cat hybrid and demonstrated the formation of the bipartite structure found in primate and rodent inactivated X Chromosomes. Conservation of gene order and recombination patterns is attributable to strong selective constraints on three-dimensional genomic...
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LETTER: A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-qun Chen,
- Naoya Yuhki,
- Deborah Hirschmann,
- Marilyn Menotti-Raymond,
- and Stephen J. O'Brien
Genome Res. May 1, 2000 10: 691-702; doi:10.1101/gr.10.5.691
....J. , Shan S. , Chen Z.Q. , Pecon-Slattery J. , O'Brien S.J. ( 1999b ) Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping. Genome Res. 9 : 1223 – 1230 . ↵ Nadeau J.H. , Taylor B.A. ( 1984 ) Lengths of chromosomal segments conserved since...
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LETTER: Parallel Radiation Hybrid Mapping: A Powerful Tool for High-Resolution Genomic Comparison
- Ya-Ping Yang and
- James E. Womack
Genome Res. July 1, 1998 8: 731-736; doi:10.1101/gr.8.7.731
...of bovine chromosome 19 and ordered comparative mapping with human chromosome 17. Genomics 48 : 93 – 99 . Parallel Radiation Hybrid Mapping: A Powerful Tool for High-Resolution Genomic Comparison Ya-Ping Yang 1 and James E. Womack 2 Department of Veterinary Pathobiology and Center for Animal Genetics...
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METHODS: Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species
- James W. Thomas,
- Arjun B. Prasad,
- Tyrone J. Summers,
- Shih-Queen Lee-Lin,
- Valerie V.B. Maduro,
- Jacquelyn R. Idol,
- Joseph F. Ryan,
- Pamela J. Thomas,
- Jennifer C. McDowell,
- and Eric D. Green
Genome Res. August 1, 2002 12: 1277-1285; doi:10.1101/gr.283202
...in mammals ( Lyons et al. 1997 ). To facilitate multispecies comparative mapping, a strategy that employs universal overgo-type hybridization probes for the parallel construction of sequence-ready BAC maps in multiple species has been developed. As a proof of principle, this approach has been implemented...
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LETTER: Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome
- Sara A. Sandstedt and
- Priscilla K. Tucker
Genome Res. February 2004 14: 267-272; doi:10.1101/gr.1796204
...-Slattery, J., and O'Brien, S.J. 1999 . Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping. Genome Res. 9 : 1223 -1230. ↵ Musser, G.G. and Carleton, M.D. 1993 . Family Muridae. In Mammal species of the world: A taxonomic and geographic...
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LETTER: Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region
- Naoya Yuhki,
- Thomas Beck,
- Robert M. Stephens,
- Yoko Nishigaki,
- Kymberly Newmann,
- and Stephen J. O'Brien
Genome Res. June 2003 13: 1169-1179; Published in Advance May 12, 2003, doi:10.1101/gr.976103
...consortium. 1999 . Complete sequence and gene map of a human major histocompatibility complex. Nature 401 : 921 –923. ↵ Murphy, W.J., Sun, S., Chen, Z., Yuhki, N., Hirschmann, D., Menotti-Raymond, M., and O'Brien, S.J. 2000 . A radiation hybrid map of the cat : Implications for comparative mapping. Genome...
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RESOURCE: Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping
- Doriana Misceo,
- Oronzo Capozzi,
- Roberta Roberto,
- Maria P. Dell’Oglio,
- Mariano Rocchi,
- Roscoe Stanyon,
- and Nicoletta Archidiacono
Genome Res. September 2008 18: 1530-1537; Published in Advance June 13, 2008, doi:10.1101/gr.078295.108
...revealed by parallel radiation hybrid mapping . Genome Res. 9 : 1223 – 1230 . ↵ Murphy, W.J. , Larkin, D.M. , Everts-van der Wind, A. , Bourque, G. , Tesler, G. , Auvil, L. , Beever, J.E. , Chowdhary, B.P. , Galibert, F. , Gatzke, L. , et al. ( 2005 ) Dynamics of mammalian chromosome evolution inferred...
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LETTER: The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals
- William J. Murphy,
- Lutz Frönicke,
- Stephen J. O'Brien,
- and Roscoe Stanyon
Genome Res. August 2003 13: 1880-1888; Published in Advance July 17, 2003, doi:10.1101/gr.1022303
...hybrid panel and comparative mapping of human chromosome 12 and 22 loci. Genomics 57 : 1 -8. ↵ Murphy, W.J., Sun, S., Chen, Z.Q., Pecon-Slattery, J., and O'Brien, S.J. 1999b . Extensive conservation of sex chromosome organization between cat and human. Genome Res. 9 : 1223 -1230. ↵ Murphy, W.J., Sun, S...

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