Searching journal content for articles similar to Murphy et al. 16 (3): 340.

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  1. Research: Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    • Florian Caiment,
    • Carole Charlier,
    • Tracy Hadfield,
    • Noelle Cockett,
    • Michel Georges,
    • and Denis Baurain
    Genome Res. December 2010 20: 1651-1662; Published in Advance October 13, 2010, doi:10.1101/gr.108787.110
    ...domain. We demonstrate that the latter are imprinted and preferentially expressed from the maternal allele. We show that the CLPG mutation affects their level of expression in cis (∼3.2-fold increase) as well as in trans (∼1.8-fold increase). In CLPG/CLPG animals, miRNAs from the DLK1–GTL2...
  2. LETTER: A Large Imprinted microRNA Gene Cluster at the Mouse Dlk1-Gtl2 Domain
    • Hervé Seitz,
    • Hélène Royo,
    • Marie-Line Bortolin,
    • Shau-Ping Lin,
    • Anne C. Ferguson-Smith,
    • and Jérôme Cavaillé
    Genome Res. September 2004 14: 1741-1748; Published in Advance August 12, 2004, doi:10.1101/gr.2743304
    .... Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. Hum. Mol. Genet. 11 : 1527 -1538. ↵ Charlier, C., Segers, K., Karim, L., Shay, T., Gyapay, G., Cockett, N., and Georges, M. 2001 . The callipyge mutation...
  3. Resource: An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants
    • Can Yuan,
    • Lijing Tang,
    • Thomas Lopdell,
    • Vyacheslav A. Petrov,
    • Claire Oget-Ebrad,
    • Gabriel Costa Monteiro Moreira,
    • José Luis Gualdrón Duarte,
    • Arnaud Sartelet,
    • Zhangrui Cheng,
    • Mazdak Salavati,
    • D. Claire Wathes,
    • Mark A. Crowe,
    • GplusE Consortium,
    • Wouter Coppieters,
    • Mathew Littlejohn,
    • Carole Charlier,
    • Tom Druet,
    • Michel Georges,
    • and Haruko Takeda
    Genome Res. October 2023 33: 1848-1864; Published in Advance September 26, 2023, doi:10.1101/gr.277947.123
    ...by perturbing the expression profile of genes located in cis (standard polygenic model) or, possibly, by perturbing the gene regulatory network and affecting the expression profile of a restricted number of core genes in trans (omnigenic model) (Liu et al. 2019). Regulatory variants are more difficult...
  4. PERSPECTIVE: Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed
    • Mariano Rocchi,
    • Nicoletta Archidiacono,
    • and Roscoe Stanyon
    Genome Res. December 2006 16: 1441-1444; Published in Advance October 19, 2006, doi:10.1101/gr.5687906
    ...) Callipyge mutation affects gene expression in cis: A potential role for chromatin structure . Genome Res. 16 : 340 – 346 . ↵ Nagaki, K. , Cheng, Z. , Ouyang, S. , Talbert, P.B. , Kim, M. , Jones, K.M. , Henikoff, S. , Buell, C.R. , Jiang, J. ( 2004 ) Sequencing of a rice centromere uncovers active genes...
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