Searching journal content for articles similar to Murphy et al. 13 (8): 1880.

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  1. Research: Genomic architecture constrained placental mammal X Chromosome evolution
    • Wesley A. Brashear,
    • Kevin R. Bredemeyer,
    • and William J. Murphy
    Genome Res. August 2021 31: 1353-1365; Published in Advance July 22, 2021, doi:10.1101/gr.275274.121
    ...conservation does not fall within the scope of Ohno's original prediction (Ohno 1967) as intrachromosomal rearrangements presumably would not disrupt dosage levels to the same degree as would interchromosomal translocations. Linkage conservation is also not as pervasive as the conservation of gene content...
  2. Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
    • Xinghua Li,
    • Judith E. Mank,
    • and Liping Ban
    Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
    ..., and Diptera, and the 800 Mb grasshopper X Chromosome is homologous to the fly ancestral X Chromosome despite 400 million years of divergence, suggesting either repeated origin of sex chromosomes with highly similar gene content, or long-term conservation of the X Chromosome. We use this broad conservation...
  3. Research: Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals
    • Yoshihito Niimura,
    • Atsushi Matsui,
    • and Kazushige Touhara
    Genome Res. September 2014 24: 1485-1496; Published in Advance July 22, 2014, doi:10.1101/gr.169532.113
    ...both elephant and non-elephant genes in a phylogenetic gene tree of a candidate OGG. If a clade contained elephant genes and genes from other species, those elephant and non-elephant genes were likely tohave originated froma single ancestral gene in the MRCA of placental mammals, and therefore...
  4. Research: Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system
    • Dan Sun,
    • Donna L. Maney,
    • Thomas S. Layman,
    • Paramita Chatterjee,
    • and Soojin V. Yi
    Genome Res. October 2019 29: 1673-1684; Published in Advance September 23, 2019, doi:10.1101/gr.248641.119
    ...in female heterogametic systems.Chromosomal sex determination is widespread in animals, having originated multiple times in different lineages (for reviews, see Bachtrog et al. 2014; Graves 2016). For example, birds have a female-heterogametic sex chromosome system in which males are homozygous for the Z...
  5. Research: Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
    • Wesley A. Brashear,
    • Terje Raudsepp,
    • and William J. Murphy
    Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
    .... Origins and functional evolution of Y chromosomes across mammals. Nature 508: 488–493. doi:10.1038/nature13151 ↵Davis BW, Seabury CM, Brashear WA, Li G, Roelke-Parker M, Murphy WJ. 2015. Mechanisms underlying mammalian hybrid sterility in two feline interspecies models. Mol Biol Evol 32: 2534–2546. doi:10...
  6. Research: Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution
    • Sahin Naqvi,
    • Daniel W. Bellott,
    • Kathy S. Lin,
    • and David C. Page
    Genome Res. April 2018 28: 474-483; Published in Advance February 15, 2018, doi:10.1101/gr.230433.117
    ...to the mammalian or avian sex chromosomes have undergone significant changes in gene dosage. In modern mammals, these molecular events have resulted in three classes of ancestral X-linked genes representing distinct evolutionary fates: those with a surviving Y homolog, those with no Y homolog and subject to XCI...
    OPEN ACCESS ARTICLE
  7. LETTER: Phylogenetic Origin of Human Chromosomes 7, 16, and 19 and their Homologs in Placental Mammals
    • Florence Richard,
    • Martine Lombard,
    • and Bernard Dutrillaux
    Genome Res. May 1, 2000 10: 644-651; doi:10.1101/gr.10.5.644
    ...Phylogenetic Origin of Human Chromosomes 7, 16, and 19 and their Homologs in Placental Mammals Florence Richard 1 , 2 , 4 , Martine Lombard 1 , and Bernard Dutrillaux 1 , 3 1Unité Mixte de Recherche (UMR) 147 Centre National de Recherche...
  8. Platypus Special/Letter: Origin of INSL3-mediated testicular descent in therian mammals
    • Jae-Il Park,
    • Jenia Semyonov,
    • Chia Lin Chang,
    • Wei Yi,
    • Wesley Warren,
    • and Sheau Yu Teddy Hsu
    Genome Res. June 2008 18: 974-985; Published in Advance May 7, 2008, doi:10.1101/gr.7119108
    ...chromosome 19p13 fragment. (**) The co-orthologous relationship of the zebrafish RFLC2 gene on chromosome 24 to the pufferfish counterparts was determined based on sequence similarity analysis. INSL3 is a therian mammal-specific signature protein In addition to revealing the origin of relaxin family genes...
  9. Research: Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
    • Stefan Washietl,
    • Manolis Kellis,
    • and Manuel Garber
    Genome Res. April 2014 24: 616-628; Published in Advance January 15, 2014, doi:10.1101/gr.165035.113
    ..., with 73% of lincRNAs in cow, 58% in mouse, and 54% in rat, showing >30% exonic alignment. This fraction is well below that of mRNAs but clearly above random regions (Table 1; Supplemental Fig. 3). LincRNA expression across mammals To detect the expression of homologous lincRNAs in other species, we...
  10. Research: Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica
    • Xu Wang,
    • Kory C. Douglas,
    • John L. VandeBerg,
    • Andrew G. Clark,
    • and Paul B. Samollow
    Genome Res. January 2014 24: 70-83; Published in Advance September 24, 2013, doi:10.1101/gr.161919.113
    ...chromosomes, and expression was exclusively from the inactive (paternal) X chromosome. Our study provides the first comprehensive catalog of parent-of-origin expression status for X-linked genes in a marsupial and sheds light on the regulation and evolution of imprinted XCI in mammals. [Supplemental material...
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