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Mini-Review: Toward telomere-to-telomere cat genomes for precision medicine and conservation biology
- William J. Murphy and
- Andrew J. Harris
Genome Res. May 2024 34: 655-664; Published in Advance June 7, 2024, doi:10.1101/gr.278546.123
..., Agarwala R, Schäffer AA, Houck M, Chowdhary BP, Murphy WJ. 2009. A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics 93: 299–304. doi:10.1016/j.ygeno.2008.09.010 ↵Davis BW, Li G, Murphy WJ. 2010. Supermatrix and species tree methods...
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RESOURCE: Initial sequence and comparative analysis of the cat genome
- Joan U. Pontius,
- James C. Mullikin,
- Douglas R. Smith,
- Agencourt Sequencing Team,
- Kerstin Lindblad-Toh,
- Sante Gnerre,
- Michele Clamp,
- Jean Chang,
- Robert Stephens,
- Beena Neelam,
- Natalia Volfovsky,
- Alejandro A. Schäffer,
- Richa Agarwala,
- Kristina Narfström,
- William J. Murphy,
- Urs Giger,
- Alfred L. Roca,
- Agostinho Antunes,
- Marilyn Menotti-Raymond,
- Naoya Yuhki,
- Jill Pecon-Slattery,
- Warren E. Johnson,
- Guillaume Bourque,
- Glenn Tesler,
- NISC Comparative Sequencing Program,
- and Stephen J. O’Brien
Genome Res. November 2007 17: 1675-1689; doi:10.1101/gr.6380007
...represented by at least two included contigs), the scaffolds were broken and placed on separate dog chromosomes. A total of 1680 ordered markers from the radiation hybrid map ( Murphy et al. 2007 ) were then used to place scaffolds on cat chromosomes. The mapped feline contigs include 1.36 Gb from 663...
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RESOURCE: The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
- Bhanu P. Chowdhary,
- Terje Raudsepp,
- Srinivas R. Kata,
- Glenda Goh,
- Lee V. Millon,
- Veronica Allan,
- François Piumi,
- Gérard Guérin,
- June Swinburne,
- Matthew Binns,
- Teri L. Lear,
- Jim Mickelson,
- James Murray,
- Douglas F. Antczak,
- James E. Womack,
- and Loren C. Skow
Genome Res. April 1, 2003 13: 742-751; doi:10.1101/gr.917503
...The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes Bhanu P. Chowdhary 1 , 10 , Terje Raudsepp 1 , Srinivas R. Kata 2 , Glenda Goh 1 , Lee V. Millon 3 , Veronica...
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LETTER: Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-Qun Chen,
- Jill Pecon-Slattery,
- and Stephen J. O'Brien
Genome Res. December 1, 1999 9: 1223-1230; doi:10.1101/gr.9.12.1223
...for polyploid radiation hybrid mapping. Genome Res. 5 : 136 – 150 . ↵ Lyons L.A. , Laughlin T.F. , Jenkins N. , Copeland N. , Womack J.E. , O'Brien S.J. ( 1997 ) Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian s. Nat. Genet. 15 : 47 – 56 . ↵ Mazeyrat S. , Saut N. , Sargent C...
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LETTER: A Comparative Map of the Zebrafish Genome
- Ian G. Woods,
- Peter D. Kelly,
- Felicia Chu,
- Phuong Ngo-Hazelett,
- Yi-Lin Yan,
- Hui Huang,
- John H. Postlethwait,
- and William S. Talbot
Genome Res. December 1, 2000 10: 1903-1914; doi:10.1101/gr.164600
.... , Yuhki N. , Hirschmann D. , MenottiRaymond M. , O'Brien S.J. ( 2000 ) A radiation hybrid map of the cat : implications for comparative mapping. Genome Res. 10 : 691 – 702 . ↵ Naruse K. , Fukamachi S. , Mitani H. , Kondo M. , Matsuoka T. , Kondo S. , Hanamura N. , Morita Y. , Hasegawa K. , Nishigaki R...
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RESOURCE: A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence
- Denis M. Larkin,
- Annelie Everts-van der Wind,
- Mark Rebeiz,
- Peter A. Schweitzer,
- Sharon Bachman,
- Cheryl Green,
- Chris L. Wright,
- Edhilvia J. Campos,
- Leslie D. Benson,
- Jennifer Edwards,
- Lei Liu,
- Kazutoyo Osoegawa,
- James E. Womack,
- Pieter J. de Jong,
- and Harris A. Lewin
Genome Res. August 2003 13: 1966-1972; doi:10.1101/gr.1560203
.... ↵ Murphy, W.J., Sun, S., Chen, Z., Yuhki, N., Hirschmann, D., Menotti-Raymond, M., and O'Brien, S.J. 2000 . A radiation hybrid map of the cat : Implications for comparative mapping. Genome Res. 10 : 691 -702. ↵ O'Brien, S.J., Eizirik, E., and Murphy, W.J. 2001 . Genomics. On choosing mammalian s...
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RESOURCE: A meiotic linkage map of the silver fox, aligned and compared to the canine genome
- Anna V. Kukekova,
- Lyudmila N. Trut,
- Irina N. Oskina,
- Jennifer L. Johnson,
- Svetlana V. Temnykh,
- Anastasiya V. Kharlamova,
- Darya V. Shepeleva,
- Rimma G. Gulievich,
- Svetlana G. Shikhevich,
- Alexander S. Graphodatsky,
- Gustavo D. Aguirre,
- and Gregory M. Acland
Genome Res. March 2007 17: 387-399; Published in Advance February 6, 2007, doi:10.1101/gr.5893307
...allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog to all chromosomes . Genome Res. 11 : 1784 – 1795 . ↵ Breen, M. , Hitte, C. , Lorentzen, T.D. , Thomas, R. , Cadieu, E. , Sabacan, L. , Scott, A. , Evanno, G. , Parker, H.G. , Kirkness, E.F. , et al. ( 2004...
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Research: Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution
- Veronica J. Murtagh,
- Denis O'Meally,
- Natasha Sankovic,
- Margaret L. Delbridge,
- Yoko Kuroki,
- Jeffrey L. Boore,
- Atsushi Toyoda,
- Kristen S. Jordan,
- Andrew J. Pask,
- Marilyn B. Renfree,
- Asao Fujiyama,
- Jennifer A. Marshall Graves,
- and Paul D. Waters
Genome Res. March 2012 22: 498-507; Published in Advance November 29, 2011, doi:10.1101/gr.120790.111
...the presence ofHCFC1X and RPL10X in the isolated clones by PCR using a single colony as the template DNA. Fluorescent in situ hybridization Positive clones were mapped to the tammar Y chromosome by fluorescence in situ hybridization (FISH) on male metaphase chromosomes using Digoxigenin (DIG) and Biotin...
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RESOURCE: A Sequence-Based Integrated Map of Chromosome 22
- William J. Tapper,
- Newton E. Morton,
- Ian Dunham,
- Xiayi Ke,
- and Andrew Collins
Genome Res. July 1, 2001 11: 1290-1295; doi:10.1101/gr.161301
...of the genome is analyzed. The radiation hybrid map has 5% error in order and 34% error in location exceeding 1 Mb. The utility of a composite location based on evidence other than sequence is limited to regions not yet sequenced. A genetic map conditional on sequence order was constructed from pairwise lods...
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REVIEW: Zooming in on the Human–Mouse Comparative Map: Genome Conservation Re-examined on a High-Resolution Scale
- Ethan A. Carver and
- Lisa Stubbs
Genome Res. December 1, 1997 7: 1123-1137; doi:10.1101/gr.7.12.1123
..., therefore, often polymorphic in length. This property makes CATS markers useful for a variety of purposes, including interspecific crosses, somatic cell hybrid mapping, clone selection, and physical mapping experiments. Simple sequence repeat markers developed for use in one can also often be used...

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