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LETTER: An Ordered Comparative Map of the Cattle and Human Genomes
- Mark R. Band,
- Joshua H. Larson,
- Mark Rebeiz,
- Cheryl A. Green,
- D. Wayne Heyen,
- Jena Donovan,
- Ryan Windish,
- Chad Steining,
- Prapti Mahyuddin,
- James E. Womack,
- and Harris A. Lewin
Genome Res. September 1, 2000 10: 1359-1368; doi:10.1101/gr.145900
...portion of BTA28. A different example of change in map resolution is shown on the RH maps of BTA10 and BTA21 that show previously undescribed rearrangements between homologous segments of regions on HSA14 and HSA15. In all, we observed 105 conserved segments with two or more genes and a potential for 149...
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RESOURCE: An Enhanced Linkage Map of the Sheep Genome Comprising More Than 1000 Loci
- Jillian F. Maddox,
- Kizanne P. Davies,
- Allan M. Crawford,
- Dennis J. Hulme,
- Daniel Vaiman,
- Edmond P. Cribiu,
- Bradley A. Freking,
- Ken J. Beh,
- Noelle E. Cockett,
- Nina Kang,
- Christopher D. Riffkin,
- Roger Drinkwater,
- Stephen S. Moore,
- Ken G. Dodds,
- Joanne M. Lumsden,
- Tracey C. van Stijn,
- Sin H. Phua,
- David L. Adelson,
- Heather R. Burkin,
- Judith E. Broom,
- Johannes Buitkamp,
- Lisa Cambridge,
- William T. Cushwa,
- Emily Gerard,
- Susan M. Galloway,
- Blair Harrison,
- Rachel J. Hawken,
- Stefan Hiendleder,
- Hannah M. Henry,
- Juan F. Medrano,
- Korena A. Paterson,
- Laurent Schibler,
- Roger T. Stone,
- and Beryl van Hest
Genome Res. July 1, 2001 11: 1275-1289; Published in Advance June 12, 2001, doi:10.1101/gr.135001
...that of cattle is found at the tip of the long arm. Other differences between ruminant X chromosomes include the relative positions of the centromeres, and the rearrangement of the bovine Xp24–Xq12 and Xq21–Xq24 regions in goats ( Piumi et al. 1998 ). Comparison of the ovine and bovine X chromosome linkage maps...
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ARTICLE: A linkage map of the ovine X chromosome.
- S M Galloway,
- V Hanrahan,
- K G Dodds,
- M D Potts,
- A M Crawford,
- and D F Hill
Genome Res. August 1996 6: 667-677; doi:10.1101/gr.6.8.667
.... , Craig, I.W. , Boyd. Y. Blair, H.J., Ho, M. Monaco, A.P. Fisher, S. Craig, I.W. and Boyd. Y. 1995 . High-resolution comparative mapping of the proximal region of the mouse X chromosome. Genomics 28 : 305 – 310 . Botstein, D., , White, R.L. , Skolnick, M. , Davis. R.W. Botstein, D., White, R.L. Skolnick...
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LETTER: A 7.5 Mb Sequence-Ready PAC Contig and Gene Expression Map of Human Chromosome 11p13–p14.1
- Beate Gawin,
- Alexandra Niederführ,
- Nina Schumacher,
- Holger Hummerich,
- Peter F.R. Little,
- and Manfred Gessler
Genome Res. November 1, 1999 9: 1074-1086; doi:10.1101/gr.9.11.1074
...loci, suggesting a possible synteny ( Miles et al. 1998 ; C. Miles and G. Elgar, pers. comm.). The fact that GA17 maps to chromosome X (DXS983–995) according to GeneMap'98 likely results from the presence of a truncated GA17 pseudogene that can be detected in the PAC 849L7 located on Xq21 (Gen...
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ARTICLE: The Genexpress Index: a resource for gene discovery and the genic map of the human genome.
- R Houlgatte,
- R Mariage-Samson,
- S Duprat,
- A Tessier,
- S Bentolila,
- B Lamy,
- and C Auffray
Genome Res. October 1995 5: 272-304; doi:10.1101/gr.5.3.272
.... and Sutherland. G.R. 1995 . Integration of transcript and genetic maps of chromosome 16 at near 1 Mb resolution: Demonstration of a hot spot for recombination at 16pl2. Genomics 29 : 503 – 511 . Chen, E., , d'Urso, M. , Schlessinger. D. Chen, E., d'Urso, M. and Schlessinger. D. 1994 . Functional mapping...
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Research: The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer
- Ronan Chaligné,
- Tatiana Popova,
- Marco-Antonio Mendoza-Parra,
- Mohamed-Ashick M. Saleem,
- David Gentien,
- Kristen Ban,
- Tristan Piolot,
- Olivier Leroy,
- Odette Mariani,
- Hinrich Gronemeyer,
- Anne Vincent-Salomon,
- Marc-Henri Stern,
- and Edith Heard
Genome Res. April 2015 25: 488-503; Published in Advance February 4, 2015, doi:10.1101/gr.185926.114
..., although the profile is rather different from that seen for HMEC; (3) the region surrounding the XIC shows a profile similar to that seen innormal cells; and (4) the regionspanningXq21.33 to the end of the long arm, which is no longer linked to the XIC (see Fig. 3), does not display discernable H3K27me3...
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Research: Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability
- Keiko Akagi,
- Jingfeng Li,
- Tatevik R. Broutian,
- Hesed Padilla-Nash,
- Weihong Xiao,
- Bo Jiang,
- James W. Rocco,
- Theodoros N. Teknos,
- Bhavna Kumar,
- Danny Wangsa,
- Dandan He,
- Thomas Ried,
- David E. Symer,
- and Maura L. Gillison
Genome Res. February 2014 24: 185-199; Published in Advance November 7, 2013, doi:10.1101/gr.164806.113
...lines. Schematics of genomic target loci before (top) and after (bottom) HPV integration in HNSCC cell lines (A) UM-SCC-47 and (B) UPCI:SCC090, chromosome 6. Target gene schematic and connectivity map features are as described in the Figure 4 legend. HPV breakpoint numbers are listed in Supplemental...
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LETTER: Generation and Analysis of 25 Mb of Genomic DNA from the Pufferfish Fugu rubripes by Sequence Scanning
- Greg Elgar,
- Melody S. Clark,
- Stephen Meek,
- Sarah Smith,
- Sarah Warner,
- Yvonne J.K. Edwards,
- Nassima Bouchireb,
- Amanda Cottage,
- Giles S.H. Yeo,
- Yagnesh Umrania,
- Gary Williams,
- and Sydney Brenner
Genome Res. October 1, 1999 9: 960-971; doi:10.1101/gr.9.10.960
...but not necessarily gene order ( Kehrer-Sawatzki et al. 1999 ; Gellner et al. 1999 ), and extensive differences in gene order within regions of conserved synteny ( Gilley et al. 1999 ). One of the Fugu cosmids scanned, 061J03, contains the Fugu ortholg of Bruton's tyrosine kinase gene (BTK), which in man maps to Xq21...
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LETTER: Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]_n in the X escape region
- John A. McNeil,
- Kelly P. Smith,
- Lisa L. Hall,
- and Jeanne B. Lawrence
Genome Res. April 2006 16: 477-484; Published in Advance March 13, 2006, doi:10.1101/gr.4627606
...distribution (data not shown). We also examined the distribution of [GATA] n at high resolution along the X chromosome by searching for perfect incidences of GATA repeats of any length, rather than nine base words, and creating a physical map (Fig. 6 ). This analysis shows that [GATA] n is present at a large...
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LETTER: Segmental Duplications in Euchromatic Regions of Human Chromosome 5: A Source of Evolutionary Instability and Transcriptional Innovation
- Anouk Courseaux,
- Florence Richard,
- Josiane Grosgeorge,
- Christine Ortola,
- Agnes Viale,
- Claude Turc-Carel,
- Bernard Dutrillaux,
- Patrick Gaudray,
- and Jean-Louis Nahon
Genome Res. March 1, 2003 13: 369-381; Published in Advance February 12, 2003, doi:10.1101/gr.490303
...version: In this window In a new window Figure 4. Paralogy map and sequence content of the HSA5/HSA6 duplicon. The genomic organization of the duplicated region was deduced from the AL157879 and AL133255 clones that were chosen as reference seed sequence. The thick gray lines illustrate the homology...

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