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Letter: Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
- Cameron Johnson,
- Anna Kasprzewska,
- Kristin Tennessen,
- John Fernandes,
- Guo-Ling Nan,
- Virginia Walbot,
- Venkatesan Sundaresan,
- Vicki Vance,
- and Lewis H. Bowman
Genome Res. August 2009 19: 1429-1440; Published in Advance July 7, 2009, doi:10.1101/gr.089854.108
...that could potentially target the sense or antisense sequence of the 22-nt motif and direct phasing of the 21-mer phased inflorescence small RNAs. Twelve 22-nt small RNAs were identified that could target the motif using rules established for miRNA targeting (Table 3; also see Methods; Llave et al. 2002...
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LETTER: Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
- Hanhui Kuang,
- Chellappan Padmanabhan,
- Feng Li,
- Ayako Kamei,
- Pudota B. Bhaskar,
- Shu Ouyang,
- Jiming Jiang,
- C. Robin Buell,
- and Barbara Baker
Genome Res. January 2009 19: 42-56; Published in Advance November 26, 2008, doi:10.1101/gr.078196.108
...Table S2.1) and identification of MiS9 small RNA with perfect matches to the predicted MiS9 ssRNA hairpin also supports the hypothesized role of MITE-derived siRNAs in post-transcriptional silencing. In this regard, it is interesting to note that deep sequencing of tomato small RNAs revealed that TAPIR...

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