Searching journal content for articles similar to Montibus et al. 34 (12): 2163.

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  1. Review: The superpowers of imprinting control regions
    • Bertille Montibus,
    • Franck Court,
    • and Philippe Arnaud
    Genome Res. January 2026 36: 1-19; Published in Advance December 10, 2025, doi:10.1101/gr.281215.125
    .... Although most of these gDMRs are erased during the global DNA methylation reprogramming that occurs in preimplantation development (right), ICRs stand out by being protected through the recruitment of ZFP57/ZNF445 and the KRAB-ZNF corepressor complex (left). This protection leads to the maintenance of 20...
  2. Resource: Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver
    • Xin Li,
    • Yun Liu,
    • Tal Salz,
    • Kasper D. Hansen,
    • and Andrew Feinberg
    Genome Res. December 2016 26: 1730-1741; Published in Advance October 13, 2016, doi:10.1101/gr.211854.116
    ...-regulatory elements, such as enhancers, and thus potentially involved in regulation of tissue-specific gene expression (Pastor et al. 2013; Wu and Zhang 2014). However, how 5hmC regulates and shapes tissue-specific epis through DNA demethylation remains largely unknown. Significant global loss of hydroxymethylation...
  3. Resource: Genome-wide discovery of human splicing branchpoints
    • Tim R. Mercer,
    • Michael B. Clark,
    • Stacey B. Andersen,
    • Marion E. Brunck,
    • Wilfried Haerty,
    • Joanna Crawford,
    • Ryan J. Taft,
    • Lars K. Nielsen,
    • Marcel E. Dinger,
    • and John S. Mattick
    Genome Res. February 2015 25: 290-303; Published in Advance January 5, 2015, doi:10.1101/gr.182899.114
    ...(seeMethods; Supplemental Fig. 2A).We confirmed circular RNA protection using PCR targeting linear and circular isoformsofMAN1A2andFBXW4genes (Supplemental Fig. 2B,C; Salzman et al. 2012). Digested libraries were sequenced and aligned to the , indicating a global 9.6-fold global enrichment for introns...
  4. Research: Polycomb preferentially targets stalled promoters of coding and noncoding transcripts
    • Daniel Enderle,
    • Christian Beisel,
    • Michael B. Stadler,
    • Moritz Gerstung,
    • Prashanth Athri,
    • and Renato Paro
    Genome Res. February 2011 21: 216-226; Published in Advance December 22, 2010, doi:10.1101/gr.114348.110
    .... In parallel, we isolated RNA from S2 cells and generated global gene expression profiles by RNAseq to correlate protein binding with transcriptional activity. Furthermore, we surveyed the Drosophila for nonannotated TSSs using a newly adapted protocol for Illumina sequencing (termed 59-MACE) with RNA isolated...
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