Searching journal content for articles similar to Mishra et al. 33 (2): 218.

Displaying results 1-7 of 7

For checked items

view abstracts
download to citation manager

Select this article
Perspective: Applications of single-cell genomics and computational strategies to study common disease and population-level variation
- Benjamin J. Auerbach,
- Jian Hu,
- Muredach P. Reilly,
- and Mingyao Li
Genome Res. October 2021 31: 1728-1741; doi:10.1101/gr.275430.121
...Although recent years have seen the development of single-cell technologies to survey new molecular modalities such as proteins and chromatin accessibility, scRNA-seq has been mostly widely used to study human disease because of its maturity. Since the first transcriptome-wide profiling of mRNA by high...
OPEN ACCESS ARTICLE
Select this article
Method: Parallel analysis of replication timing, gene expression, and copy number with PARTAGE
- Lakshana Sruthi Sadu Murari,
- Quinn Dickinson,
- Silvia Meyer-Nava,
- and Juan Carlos Rivera-Mulia
Genome Res. April 2026 36: 802-813; Published in Advance March 19, 2026, doi:10.1101/gr.281532.125
..., Dee N, et al. 2018. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. PLoS One 13: e0209648. doi:10.1371/journal.pone.0209648 ↵Bartlett DA, Dileep V, Baslan T, Gilbert DM. 2022. Mapping replication timing in single mammalian cells. Curr Protoc 2: e334. doi:10...
OPEN ACCESS ARTICLE
Select this article
Resource: An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
- Guanjue Xiang,
- Cheryl A. Keller,
- Elisabeth Heuston,
- Belinda M. Giardine,
- Lin An,
- Alexander Q. Wixom,
- Amber Miller,
- April Cockburn,
- Michael E.G. Sauria,
- Kathryn Weaver,
- Jens Lichtenberg,
- Berthold Göttgens,
- Qunhua Li,
- David Bodine,
- Shaun Mahony,
- James Taylor,
- Gerd A. Blobel,
- Mitchell J. Weiss,
- Yong Cheng,
- Feng Yue,
- Jim Hughes,
- Douglas R. Higgs,
- Yu Zhang,
- and Ross C. Hardison
Genome Res. March 2020 30: 472-484; Published in Advance March 4, 2020, doi:10.1101/gr.255760.119
...recent analyses of single cell transcriptomes have revealed heterogeneity in each of these cell populations (Sanjuan-Pla et al. 2013; Psaila et al. 2016). Overall, analyses of single cell transcriptomes support an ensemble of pathways for differentiation (Nestorowa et al. 2016; Laurenti and Göttgens 2018...
OPEN ACCESS ARTICLE
Select this article
Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
- Shahmir Naseer,
- Thomas C Clark,
- Bertrand Collet,
- Pooran Dewari,
- Damir Baranasic,
- Daniel J Macqueen,
- Pierre Boudinot,
- and Samuel A.M. Martin
Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
...I:C), a synthetic viral mimic, and 19 profile transcriptomic and epigenomic responses in the primary haematopoietic and 20 lymphoid tissue. We used ATAC-seq and ChIP-seq (H3K27ac and H3K27me3), combined 21 with mRNA-seq, to comprehensively examine modifications in gene regulation following 22...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Method: Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2
- Alexander Zee,
- Dori Z.Q. Deng,
- Matthew Adams,
- Kayla D. Schimke,
- Russell Corbett-Detig,
- Shelbi L. Russell,
- Xuan Zhang,
- Robert J. Schmitz,
- and Christopher Vollmers
Genome Res. November/December 2022 32: 2092-2106; Published in Advance November 9, 2022, doi:10.1101/gr.277031.122
...technology has revolutionized biological, biomedical, and clinical research. Hundreds of sequencing-based methods exist today to query gene expression (RNA-seq) (Mortazavi et al. 2008), chromatin state (chromatin immunoprecipitation [ChIP]-seq and ATAC-seq) (Barski et al. 2007; Buenrostro et al. 2013...
Select this article
Resource: Impact of regulatory variation across human iPSCs and differentiated cells
- Nicholas E. Banovich,
- Yang I. Li,
- Anil Raj,
- Michelle C. Ward,
- Peyton Greenside,
- Diego Calderon,
- Po Yuan Tung,
- Jonathan E. Burnett,
- Marsha Myrthil,
- Samantha M. Thomas,
- Courtney K. Burrows,
- Irene Gallego Romero,
- Bryan J. Pavlovic,
- Anshul Kundaje,
- Jonathan K. Pritchard,
- and Yoav Gilad
Genome Res. January 2018 28: 122-131; Published in Advance December 5, 2017, doi:10.1101/gr.224436.117
...of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods 10: 1213–1218. ↵Burridge PW, Matsa E, Shukla P, Lin ZC, Churko JM, Ebert AD, Lan F, Diecke S, Huber B, Mordwinkin NM, et al. 2014. Chemically defined generation...
OPEN ACCESS ARTICLE
Select this article
Resource: Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis
- Yingshu Li,
- Yongjie Liu,
- Hang Yang,
- Ting Zhang,
- Kiyoshi Naruse,
- and Qiang Tu
Genome Res. June 2020 30: 924-937; Published in Advance June 26, 2020, doi:10.1101/gr.258871.119
...-quality sequence and a variety of genetic tools are available for this model organism. However, existing annotation is still rudimentary, as it was mainly based on computational prediction and short-read RNA-seq data. Here we report a dynamic transcriptome landscape of medaka embryogenesis profiled by long...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Mishra et al. 33 (2): 218.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: