Searching journal content for articles similar to Mir 16 (10): 1195.

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  1. Method: Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq
    • Robert A. Policastro,
    • R. Taylor Raborn,
    • Volker P. Brendel,
    • and Gabriel E. Zentner
    Genome Res. June 2020 30: 910-923; Published in Advance July 6, 2020, doi:10.1101/gr.261545.120
    ...values for pairwise comparisons between TMM-normalized per-gene STRIPE-seq and poly(A)+ RNA-seq fragment counts.Systematic comparison of yeast STRIPE-seq with CAGE-based methodsA previous study used three distinct iterations of CAGE (nanoCAGE, nAnT-iCAGE, and SLIC-CAGE) (Cvetesic et al. 2018) to profile...
  2. Methods: RNA expression profiling at the single molecule level
    • Jan Hesse,
    • Jaroslaw Jacak,
    • Maria Kasper,
    • Gerhard Regl,
    • Thomas Eichberger,
    • Martina Winklmayr,
    • Fritz Aberger,
    • Max Sonnleitner,
    • Robert Schlapak,
    • Stefan Howorka,
    • Leila Muresan,
    • Anna-Maria Frischauf,
    • and Gerhard J. Schütz
    Genome Res. August 2006 16: 1041-1045; Published in Advance June 29, 2006, doi:10.1101/gr.4999906
    ...from 200 ng total RNA. ( A ) The microarray was scanned with a pixel size of 200 nm and plotted after software-binning (25 × 25). Details 1–3 show hybridized cDNA molecules at full 200-nm resolution. Binding of low-abundant cDNAs, e.g., BCL2 (1) and S100A8 (3), was quantified by molecule counting, high...
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  3. Review: Artificial intelligence and machine learning in cell-free-DNA-based diagnostics
    • W.H. Adrian Tsui,
    • Spencer C. Ding,
    • Peiyong Jiang,
    • and Y.M. Dennis Lo
    Genome Res. January 2025 35: 1-19; doi:10.1101/gr.278413.123
    ...@cuhk.edu.hkAbstractThe discovery of circulating fetal and tumor cell-free DNA (cfDNA) molecules in plasma has opened up tremendous opportunities in noninvasive diagnostics such as the detection of fetal chromosomal aneuploidies and cancers and in posttransplantation monitoring. The advent of high-throughput sequencing...
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  4. Method: Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
    • Joseph B. Hiatt,
    • Colin C. Pritchard,
    • Stephen J. Salipante,
    • Brian J. O'Roak,
    • and Jay Shendure
    Genome Res. May 2013 23: 843-854; Published in Advance February 4, 2013, doi:10.1101/gr.147686.112
    .... The combination of MIPs and single molecule tagging form the basis for an ultra-sensitive, targeted sequencing assay that has additional attractive characteristics from the standpoint of practicality, e.g., speed, ease of use, and compatibility with small quantities of degraded DNA. To validate our method...
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