Searching journal content for articles similar to Mercier et al. 34 (3): 394.

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  1. Research: Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish
    • Charles E. Vejnar,
    • Mario Abdel Messih,
    • Carter M. Takacs,
    • Valeria Yartseva,
    • Panos Oikonomou,
    • Romain Christiano,
    • Marlon Stoeckius,
    • Stephanie Lau,
    • Miler T. Lee,
    • Jean-Denis Beaudoin,
    • Damir Musaev,
    • Hiba Darwich-Codore,
    • Tobias C. Walther,
    • Saeed Tavazoie,
    • Daniel Cifuentes,
    • and Antonio J. Giraldez
    Genome Res. July 2019 29: 1100-1114; Published in Advance June 21, 2019, doi:10.1101/gr.245159.118
    ...to quantify global changes in mRNA levels (Fig. 1A; Supplemental Table S2). Comparing early (2 hpf) to late (6 hpf) developmental stages, we defined the main regulatory mode for 5847 mRNAs undergoing decay: 3909 were regulated by the zygotic mode (67%), of which 616 were primarily dependent on miR-430 (11...
  2. Research: Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza
    • Rodolphe Dombey,
    • Daniel Buendía-Ávila,
    • Verónica Barragán-Borrero,
    • Laura Diezma-Navas,
    • Arturo Ponce-Mañe,
    • José Mario Vargas-Guerrero,
    • Rana Elias,
    • and Arturo Marí-Ordóñez
    Genome Res. March 2025 35: 522-544; Published in Advance March 4, 2025, doi:10.1101/gr.279532.124
    ...calculated mean DNA methylation levels exclusively on TEs and their density in 100 kb windows. At gene-rich regions, DNA methylation is very scarce (Fig. 3A; Supplemental Fig. S19A). As in Arabidopsis, Spirodela DNA methylation is concentrated at TE-dense regions (presumably centromeric and pericentromeric...
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