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Resource: A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons
- Qicheng Ma,
- Satyam P. Srivastav,
- Stephanie Gamez,
- Gargi Dayama,
- Fabiana Feitosa-Suntheimer,
- Edward I. Patterson,
- Rebecca M. Johnson,
- Erik M. Matson,
- Alexander S. Gold,
- Douglas E. Brackney,
- John H. Connor,
- Tonya M. Colpitts,
- Grant L. Hughes,
- Jason L. Rasgon,
- Tony Nolan,
- Omar S. Akbari,
- and Nelson C. Lau
Genome Res. March 2021 31: 512-528; Published in Advance January 8, 2021, doi:10.1101/gr.265157.120
...Albo.Mosquitoes have a major translational impact on human health, yet genomic characterizations of the culicine mosquitoes have lagged because their significantly larger s are inflated by repetitive elements. New genomic approaches such as high-throughput long-read and Hi-C sequencing may bridge scaffolding gaps...
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REVIEW: Automation for Genomics, Part One: Preparation for Sequencing
- Deirdre Meldrum
Genome Res. August 1, 2000 10: 1081-1092; doi:10.1101/gr.101400
...Automation for Genomics, Part One: Preparation for Sequencing Deirdre Meldrum 1 Department of Electrical Engineering, Genomation Laboratory, University of Washington, Seattle, Washington 98195–2500 USA Abstract In the past four years, automation for genomics...
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METHODS: A Highly Reproducible, Linear, and Automated Sample Preparation Method for DNA Microarrays
- David R. Dorris,
- Ramesh Ramakrishnan,
- Dionisios Trakas,
- Frank Dudzik,
- Richard Belval,
- Connie Zhao,
- Allen Nguyen,
- Marc Domanus,
- and Abhijit Mazumder
Genome Res. June 1, 2002 12: 976-984; doi:10.1101/gr.227402
....M. , Hampton G.M. , Lockhart D.J. ( 2001 ) Arrays of arrays for high-throughput gene expression profiling. Genome Res. 11 : 1256 – 1261 . A Highly Reproducible, Linear, and Automated Sample Preparation Method for DNA Microarrays David R. Dorris 1 , Ramesh Ramakrishnan , Dionisios Trakas , Frank Dudzik...
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METHODS: A System for Specific, High-throughput Genotyping by Allele-specific Primer Extension on Microarrays
- Tomi Pastinen,
- Mirja Raitio,
- Katarina Lindroos,
- Päivi Tainola,
- Leena Peltonen,
- and Ann-Christine Syvänen
Genome Res. July 1, 2000 10: 1031-1042; doi:10.1101/gr.10.7.1031
..., A Tomi Pastinen Leena Peltonen Mirja, Raitio Päivi Tainola Peltonen, Leena Raitio Mirja Leena 1549-5469 1088-9051 10.1101/gr.10.7.1031 genome;10/7/1031 A System for Specific, High-throughput Genotyping by Allele-specific Primer Extension on Microarrays A System for Specific, High-throughput Genotyping...
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RESOURCE: The MicrobesOnline Web site for comparative genomics
- Eric J. Alm,
- Katherine H. Huang,
- Morgan N. Price,
- Richard P. Koche,
- Keith Keller,
- Inna L. Dubchak,
- and Adam P. Arkin
Genome Res. July 2005 15: 1015-1022; doi:10.1101/gr.3844805
...Hughes Medical Institute, Berkeley, California 94720, USA Abstract At present, hundreds of microbial genomes have been sequenced, and hundreds more are currently in the pipeline. The Virtual Institute for Microbial Stress and Survival has developed a publicly available suite of Web...
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PERSPECTIVE: Genomics of the fungal kingdom: Insights into eukaryotic biology
- James E. Galagan,
- Matthew R. Henn,
- Li-Jun Ma,
- Christina A. Cuomo,
- and Bruce Birren
Genome Res. December 2005 15: 1620-1631; doi:10.1101/gr.3767105
...between fungi and man. The future of fungal genomics The growing number of complete fungal s provides an unprecedented opportunity to study the biology and evolution of an entire eukaryotic kingdom. However, sequence is only the tip of the iceberg for fungal genomics. The availability of sequence has...
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PERSPECTIVE: Impact of genomics on research in the rat
- Jozef Lazar,
- Carol Moreno,
- Howard J. Jacob,
- and Anne E. Kwitek
Genome Res. December 2005 15: 1717-1728; doi:10.1101/gr.3744005
.... Following this trend, it is expected that we will see acceleration in the rate of gene discovery in the rat, reflecting the availability of the rat sequence, the accessibility to high-throughput sequencing for the search of sequence variants, as well as microarray technologies for gene identification...
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COMMENTARY: Genomics in Latin America: Reaching the Frontiers
- Pablo D. Rabinowicz
Genome Res. March 1, 2001 11: 319-322; doi:10.1101/gr.179501
...and companies like the Genome Sequencing Center at Washington University, Cold Spring Harbor Laboratory, the Microarray Database at the School of Medicine from Stanford University, the Ludwig Institute for Cancer Research, (São Paulo, Brazil) and Cereon Genomics (Cambridge, MA). Among the students, there were...
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Methods: Footer: A quantitative comparative genomics method for efficient recognition of cis-regulatory elements
- David L. Corcoran,
- Eleanor Feingold,
- Jessica Dominick,
- Marietta Wright,
- Jo Harnaha,
- Massimo Trucco,
- Nick Giannoukakis,
- and Panayiotis V. Benos
Genome Res. June 2005 15: 840-847; doi:10.1101/gr.2952005
...of algorithms have been developed that use prior information (such as PSSM models) and comparative genomics to address the issue of accurate detection of TFBSs, including rVista ( Loots et al. 2002 ) and ConSite ( Lenhard et al. 2003 ). Given an alignment between two homologous promoter sequences, r...
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RESOURCE: Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications
- Pierre Hilson,
- Joke Allemeersch,
- Thomas Altmann,
- Sébastien Aubourg,
- Alexandra Avon,
- Jim Beynon,
- Rishikesh P. Bhalerao,
- Frédérique Bitton,
- Michel Caboche,
- Bernard Cannoot,
- Vasil Chardakov,
- Cécile Cognet-Holliger,
- Vincent Colot,
- Mark Crowe,
- Caroline Darimont,
- Steffen Durinck,
- Holger Eickhoff,
- Andéol Falcon de Longevialle,
- Edward E. Farmer,
- Murray Grant,
- Martin T.R. Kuiper,
- Hans Lehrach,
- Céline Léon,
- Antonio Leyva,
- Joakim Lundeberg,
- Claire Lurin,
- Yves Moreau,
- Wilfried Nietfeld,
- Javier Paz-Ares,
- Philippe Reymond,
- Pierre Rouzé,
- Goran Sandberg,
- Maria Dolores Segura,
- Carine Serizet,
- Alexandra Tabrett,
- Ludivine Taconnat,
- Vincent Thareau,
- Paul Van Hummelen,
- Steven Vercruysse,
- Marnik Vuylsteke,
- Magdalena Weingartner,
- Peter J. Weisbeek,
- Valtteri Wirta,
- Floyd R.A. Wittink,
- Marc Zabeau,
- and Ian Small
Genome Res. October 15, 2004 14: 2176-2189; doi:10.1101/gr.2544504
...is available online at www.genome.org. The pAgrikola sequence data have been submitted to GenBank under accession no. (AY568055) and the transcript profiling data to Array Express under accession nos. (E-MEXP-30 and E-MEXP-65). The GST amplicons and CATMA spotted microarrays are available from the Nottingham...

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