Searching journal content for articles similar to Medintz et al. 11 (3): 413.

Displaying results 1-10 of 5495

For checked items

view abstracts
download to citation manager

Select this article
Research: A genome-wide survey reveals a diverse array of enhancers coordinates the Drosophila innate immune response
- Lianne B Cohen,
- Tamara Hadzic,
- Caitlin Sauer,
- Julia R Gibbs,
- and Zeba Wunderlich
Genome Res. April 15, 2026 gr.281432.125; Published in Advance April 15, 2026, doi:10.1101/gr.281432.125
...A -wide survey reveals a diverse array of enhancers coordinates the Drosophila 1 innate immune response 2 3 Lianne B. Cohen1, 2, Tamara Hadzic2, 3, Caitlin Sauer1, 2, Julia R. Gibbs1, 2, Zeba Wunderlich1, 2, 3, 4 4* 5 1. Department of Biology, Boston University, Boston, MA 02215, USA 6 2...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Research: Long-read transcriptome sequencing of CLL and MDS patients uncovers molecular effects of SF3B1 mutations
- Alicja Pacholewska,
- Matthias Lienhard,
- Mirko Brüggemann,
- Heike Hänel,
- Lorina Bilalli,
- Anja Königs,
- Felix Heß,
- Kerstin Becker,
- Karl Köhrer,
- Jesko Kaiser,
- Holger Gohlke,
- Norbert Gattermann,
- Michael Hallek,
- Carmen D. Herling,
- Julian König,
- Christina Grimm,
- Ralf Herwig,
- Kathi Zarnack,
- and Michal R. Schweiger
Genome Res. November 2024 34: 1832-1848; Published in Advance September 13, 2024, doi:10.1101/gr.279327.124
...These authors contributed equally as first authors to this work. ↵14 These authors contributed equally as last authors to this work. Corresponding author: mschweig@uni-koeln.deAbstractMutations in splicing factor 3B subunit 1 (SF3B1) frequently occur in patients with chronic lymphocytic leukemia (CLL...
OPEN ACCESS ARTICLE
Select this article
Method: Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
- Chencheng Xu,
- Suying Bao,
- Ye Wang,
- Wenxing Li,
- Hao Chen,
- Yufeng Shen,
- Tao Jiang,
- and Chaolin Zhang
Genome Res. July 2024 34: 1052-1065; Published in Advance July 26, 2024, doi:10.1101/gr.279044.124
...window Figure 6. The performance of DeltaSplice and baseline methods in predicting splicing-altering mutations at sQTLs. GTEx brain sQTLs were used as foreground, and common SNPs were used as background. Only variants ≤200 bp from cassette exons were used for analysis. Foreground and background variants...
OPEN ACCESS ARTICLE
Select this article
Research: The rate and spectrum of new mutations in mice inferred by long-read sequencing
- Eugenio López-Cortegano,
- Jobran Chebib,
- Anika Jonas,
- Anastasia Vock,
- Sven Künzel,
- Peter D. Keightley,
- and Diethard Tautz
Genome Res. January 2025 35: 43-54; Published in Advance December 2, 2024, doi:10.1101/gr.279982.124
...for Evolutionary Biology, 24306 Plön, Germany Corresponding author: elcortegano@protonmail.comAbstractAll forms of genetic variation originate from new mutations, making it crucial to understand their rates and mechanisms. Here, we use long-read sequencing from Pacific Biosciences (PacBio) to investigate de novo...
OPEN ACCESS ARTICLE
Select this article
Research: Transcriptional modulation unique to vulnerable motor neurons predicts ALS across species and SOD1 mutations
- Irene Mei,
- Susanne Nichterwitz,
- Melanie Leboeuf,
- Jik Nijssen,
- Isadora Lenoel,
- Dirk Repsilber,
- Christian S. Lobsiger,
- and Eva Hedlund
Genome Res. September 2025 35: 1975-1991; Published in Advance July 17, 2025, doi:10.1101/gr.279501.124
...stem cell–derived SOD1E100G MNs and shows that dysregulation of VGF, INA, and PENK is a strong disease predictor across species and SOD1 mutations. Our study reveals MN population-specific gene expression and temporal disease-induced regulation that together provide a basis to explain ALS selective...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: Temperature-Modulated Array High-Performance Liquid Chromatography
- Andreas Premstaller,
- Wenzhong Xiao,
- Herbert Oberacher,
- Matthew O'Keefe,
- David Stern,
- Thomas Willis,
- Christian G. Huber,
- and Peter J. Oefner
Genome Res. November 1, 2001 11: 1944-1951; doi:10.1101/gr.200401
.... Mutat. 17 : 439 – 474 . ↵ Xiao W. , Stern D. , Jain M. , Huber C.G. , Oefner P.J. ( 2001 ) Multiplex DNA variation analysis by capillary denaturing high-performance liquid chromatography and laser-induced fluorescence detection. BioTechniques 30 : 1332 – 1338 . Temperature-Modulated Array High-Performance...
Select this article
Research: Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
- Eugenio López-Cortegano,
- Rory J. Craig,
- Jobran Chebib,
- Eniolaye J. Balogun,
- and Peter D. Keightley
Genome Res. January 2023 33: 45-60; Published in Advance December 12, 2022, doi:10.1101/gr.276957.122
....keightley@ed.ac.ukAbstractGenetic variation originates from several types of spontaneous mutation, including single-nucleotide substitutions, short insertions and deletions (indels), and larger structural changes. Structural mutations (SMs) drive evolution and are thought to play major roles in evolutionary adaptation, speciation...
OPEN ACCESS ARTICLE
Select this article
Method: Analyzing rare mutations in metagenomes assembled using long and accurate reads
- Marcus W. Fedarko,
- Mikhail Kolmogorov,
- and Pavel A. Pevzner
Genome Res. November/December 2022 32: 2119-2133; Published in Advance November 23, 2022, doi:10.1101/gr.276917.122
...Figure 6. Multiplex de Bruijn graph produced by LJA for CAMP's smoothed and virtual reads. We generated smoothed reads based on mutations identified by NaiveFreq at p = 1%. This is a MetaScope visualization (Fedarko et al. 2017) of the GFA file produced by LJA. Gray pentagons (nodes in this visualization...
Select this article
Research: Extensive variation in germline de novo mutations in Poecilia reticulata
- Yuying Lin,
- Iulia Darolti,
- Wouter van der Bijl,
- Jake Morris,
- and Judith E. Mank
Genome Res. August 2023 33: 1317-1324; Published in Advance July 13, 2023, doi:10.1101/gr.277936.123
...alignment from trios using IGV to check the linkage of DNMs and adjacent variants and validate genotype phasing results and inferred the parent of origin for phased DNMs.Mutational spectra identificationBased on SnpEff (Cingolani et al. 2012) and the guppy reference v.99 (Künstner et al. 2016), we were able...
Select this article
Research: Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa
- Mariana Villalba de la Peña,
- Pauliina A.M. Summanen,
- Martta Liukkonen,
- and Ilkka Kronholm
Genome Res. April 2023 33: 599-611; Published in Advance March 15, 2023, doi:10.1101/gr.276992.122
...Supplemental Figs. S14–S22 and Supplemental Data File S2. SNPs were genotyped using the same pipeline (for details, see Supplemental Methods).To genotype structural variants, we first compared the performance of different SV genotyping algorithms using simulated data. We simulated SVs by modifying the N...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Medintz et al. 11 (3): 413.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: