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McPherson 7 (12): 1111
.
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488
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METHODS
:
Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species
James W. Thomas
,
Arjun B. Prasad
,
Tyrone J. Summers
,
Shih-Queen Lee-Lin
,
Valerie V.B. Maduro
,
Jacquelyn R. Idol
,
Joseph F. Ryan
,
Pamela J. Thomas
,
Jennifer C. McDowell
,
and
Eric D. Green
Genome Res.
August 1, 2002
12
:
1277
-
1285
;
doi:
10.1101/gr.283202
...Parallel Construction of Orthologous Sequence-
Ready
Clone Contig Maps in Multiple Species James W. Thomas 1 , Arjun B. Prasad 1 , Tyrone J. Summers 1 , Shih-Queen Lee-Lin 1 , Valerie V.B. Maduro 1 , Jacquelyn R. Idol 1 , Joseph...
Abstract
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LETTER
:
A 7.5 Mb Sequence-Ready PAC Contig and Gene Expression Map of Human Chromosome 11p13–p14.1
Beate Gawin
,
Alexandra Niederführ
,
Nina Schumacher
,
Holger Hummerich
,
Peter F.R. Little
,
and
Manfred Gessler
Genome Res.
November 1, 1999
9
:
1074
-
1086
;
doi:
10.1101/gr.9.11.1074
...A 7.5 Mb Sequence-
Ready
PAC Contig and Gene Expression Map of Human Chromosome 11p13–p14.1 Beate Gawin 1 , Alexandra Niederführ 1 , Nina Schumacher 1 , Holger Hummerich 2 , Peter F.R. Little 2 , and Manfred Gessler 1...
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LETTER
:
High-Resolution Landmark Framework for the Sequence-Ready Mapping of Xq23–q26.1
Helen E. Steingruber
,
Andrew Dunham
,
Alison J. Coffey
,
Sheila M. Clegg
,
Gareth R. Howell
,
Gareth L. Maslen
,
Carol E. Scott
,
Rhian Gwilliam
,
Paul J. Hunt
,
Elizabeth C. Sotheran
,
Elizabeth J. Huckle
,
Sarah E. Hunt
,
Pawandeep Dhami
,
Cari Soderlund
,
Margaret A. Leversha
,
David R. Bentley
,
and
Mark T. Ross
Genome Res.
August 1, 1999
9
:
751
-
762
;
doi:
10.1101/gr.9.8.751
...High-Resolution Landmark Framework for the Sequence-
Ready
Mapping of Xq23–q26.1 Helen E. Steingruber 1 , Andrew Dunham 1 , Alison J. Coffey 1 , Sheila M. Clegg , Gareth R. Howell , Gareth L. Maslen , Carol E. Scott...
Abstract
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LETTER
:
A Sequence-Ready BAC Clone Contig of a 2.2-Mb Segment of Human Chromosome 1q24
Douglas Vollrath
and
Virna L. Jaramillo-Babb
Genome Res.
February 1, 1999
9
:
150
-
157
;
doi:
10.1101/gr.9.2.150
...A Sequence-
Ready
BAC Clone Contig of a 2.2-Mb Segment of Human Chromosome 1q24 Douglas Vollrath 1 and Virna L. Jaramillo-Babb Department of Genetics, Stanford University School of Medicine, Stanford, California 94305 USA Abstract Human chromosomal...
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LETTER
:
A Sequence-Ready BAC Contig of the GABA
A
Receptor Gene Cluster
Gabrg1–Gabra2–Gabrb1
on Mouse Chromosome 5
Andreas Lengeling
,
Tim Wiltshire
,
Chris Otmani
,
and
Maja Bućan
Genome Res.
August 1, 1999
9
:
732
-
738
;
doi:
10.1101/gr.9.8.732
...A Sequence-
Ready
BAC Contig of the GABAA Receptor Gene Cluster Gabrg1–Gabra2–Gabrb1 on Mouse Chromosome 5 Andreas Lengeling 1 , Tim Wiltshire 1 , Chris Otmani 1 , and Maja Bućan 1 , 2 , 3 1Center for Neurobiology and Behavior...
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LETTER
:
A Contiguous 3-Mb Sequence-Ready Map in the S3–MX Region on 21q22.2 Based on High- Throughput Nonisotopic Library Screenings
Thomas Hildmann
,
Xianging Kong
,
John O’Brien
,
Lisa Riesselman
,
Hoang-My Christensen
,
Emilie Dagand
,
Hans Lehrach
,
and
Marie-Laure Yaspo
Genome Res.
April 1, 1999
9
:
360
-
372
;
doi:
10.1101/gr.9.4.360
...A Contiguous 3-Mb Sequence-
Ready
Map in the S3–MX Region on 21q22.2 Based on High- Throughput Nonisotopic Library Screenings Thomas Hildmann 1 , Xianging Kong 1 , John O’Brien , Lisa Riesselman , Hoang-My Christensen , Emilie Dagand...
Abstract
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ARTICLES
:
Long-range map of a 3.5-Mb region in Xp11.23-22 with a sequence-ready map from a 1.1-Mb gene-rich interval.
D Schindelhauer
,
H Hellebrand
,
L Grimm
,
I Bader
,
T Meitinger
,
M Wehnert
,
M Ross
,
and
A Meindl
Genome Res.
November 1996
6
:
1056
-
1069
;
doi:
10.1101/gr.6.11.1056
...Long-range map of a 3.5-Mb region in Xp11.23-22 with a sequence-
ready
map from a 1.1-Mb gene-rich interval. D Schindelhauer , H Hellebrand , L Grimm , I Bader , T Meitinger , M Wehnert , M Ross , and A Meindl...
Abstract
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Research
:
Assessing the readiness of Oxford Nanopore sequencing for clinical genomics applications
Judith Arres
,
Santosh Elavalli
,
Shalini Behl
,
Daniel Matias Sanchez
,
Ayesha Al Ali
,
Abdelrahman Ahmed Yehia Abdelaziz Saad
,
Azza Attia
,
Cyla Minas
,
Sharika Pariyachery
,
Shariq Ahmed
,
Fatmah Aldhuhoori
,
Nitu Thulasidharan
,
Gurunath Katagi
,
Omar Soliman
,
Shilp Purohit
,
Vinay Kusuma
,
Raony Cardenas
,
Thyago Cardoso
,
Luis F. Paulin
,
Philippe Sanio
,
Joseph Mafofo
,
Haiguo Wu
,
Val Zvereff
,
Albarah El-Khani
,
Fahed Al Marzooqi
,
Tiago R. Magalhães
,
Fritz J. Sedlazeck
,
and
Javier Quilez
Genome Res.
March 2026
36
:
460
-
471
;
Published in Advance
February 11, 2026
,
doi:
10.1101/gr.280134.124
...-characterized reference samples with 11 clinical variants representing nine different genetic diseases. To enable this, we have implemented a production-
ready
pipeline including SNV, indel, STR, SV, and CNV detection, alongside reporting key summary metrics to ensure high-quality data at the production sequencing level...
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Method
:
Automated chromatin profiling with spa-ChIP-seq uncovers the impacts of condition variations
Yuwei Cao
,
Lauren Patel
,
Lauren Alcoser
,
Eric Mendenhall
,
Christopher Benner
,
Sven Heinz
,
and
Alon Goren
Genome Res.
January 2026
36
:
129
-
141
;
Published in Advance
December 12, 2025
,
doi:
10.1101/gr.281320.125
...IP-seq protocol, named spa-ChIP-seq, which enables scalable processing of eight to 96 ChIP-seq samples from cross-linked cells to a sequencing-
ready
library in approximately 3 days with an estimated cost of $70 per sample. Benchmarking spa-ChIP-seq against manual ChIP-seq performed in parallel demonstrates...
Abstract
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Resource
:
Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
Kangli Wang
,
Weikun Xia
,
Yingli Gu
,
Songpeng Zu
,
Qian Yang
,
Maria Luisa Amaral
,
Yaozhi Wang
,
Allen Wang
,
Xiang-Dong Fu
,
William C. Mobley
,
and
Bing Ren
Genome Res.
April 2026
36
:
849
-
864
;
Published in Advance
March 4, 2026
,
doi:
10.1101/gr.281113.125
...) and stored at −80°C until
ready
to process. Nuclei were isolated and sorted using the SH800S (Sony) for library construction as previously described (Li et al. 2021b; Supplemental Fig. S11).Single-nucleus multiomeSingle-nucleus ATAC-seq and single-nucleus RNA-seq libraries were performed for each sample...
Abstract
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Cross-modality translation in single-cell multiomics
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