Searching journal content for articles similar to McGurk and Barbash 28 (5): 714.

Displaying results 1-10 of 26

For checked items

view abstracts
download to citation manager

Select this article
Research: Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species
- Daniel Siqueira de Oliveira,
- Anaïs Larue,
- William Vilas Boas Nunes,
- Francois Sabot,
- Alejandra Bodelón,
- María Pilar García Guerreiro,
- Cristina Vieira,
- and Claudia Marcia Aparecida Carareto
Genome Res. March 2026 36: 487-505; Published in Advance February 10, 2026, doi:10.1101/gr.280463.125
...a transposase domain derived from an Hsmar1 insertion conserved in primates, providing functional DNA-binding to target methylation (Cordaux et al. 2006). Such exaptation and domestication events can often be identified by the occurrence of chimeric transcripts, which are mRNAs with both gene- and TE...
Select this article
Research: Dynamic evolution of satellite DNAs drastically differentiates the genomes of Tribolium sibling species
- Damira Veseljak,
- Evelin Despot-Slade,
- Marin Volarić,
- Lucija Horvat,
- Tanja Vojvoda Zeljko,
- Nevenka Meštrović,
- and Brankica Mravinac
Genome Res. November 2025 35: 2445-2460; Published in Advance September 16, 2025, doi:10.1101/gr.280516.125
..., transposable elements (TEs), and genes annotated in the Tfree1.0 assembly. We found that 111 satDNAs have TEs, 95 have genes, and only 27 of them have other satellite sequences in their 10-kb vicinity (Fig. 1C; Supplemental Tables S5 and S6; Supplemental Fig. S4). TEs and genes are most frequently co...
Select this article
Research: Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events
- Marin Volarić,
- Evelin Despot-Slade,
- Damira Veseljak,
- Brankica Mravinac,
- and Nevenka Meštrović
Genome Res. November 2024 34: 1878-1894; Published in Advance October 22, 2024, doi:10.1101/gr.279225.124
...point to two mechanisms that enable this satDNA spread to occur: transposition by transposable elements and insertion mediated by eccDNA. The presence of such a large proportion of satDNA in gene-rich regions inevitably gives rise to speculation about their possible influence on gene expression.Satellite...
OPEN ACCESS ARTICLE
Select this article
Review: The structure, function, and evolution of plant centromeres
- Matthew Naish and
- Ian R. Henderson
Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
...et al. 1997), where high frequency CEN178 variants are found in the center, rather than the edges, of the centromeric arrays (Wlodzimierz et al. 2023b). Concerted evolution of satellites implies that an active process of DNA breakage and homologous recombination occurs within the center of the arrays...
OPEN ACCESS ARTICLE
Select this article
Research: Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
- Joana Carlevaro-Fita,
- Taisia Polidori,
- Monalisa Das,
- Carmen Navarro,
- Tatjana I. Zoller,
- and Rory Johnson
Genome Res. February 2019 29: 208-222; Published in Advance December 26, 2018, doi:10.1101/gr.229922.117
...: In this window In a new window Figure 1. Repeat insertion domains of lncRNAs (RIDLs). (A) In the RIDL model, exonically inserted fragments of transposable elements (TEs) contain pre-formed protein-binding (red), RNA-binding (green), or DNA-binding (blue) activities that contribute to the functionality...
OPEN ACCESS ARTICLE
Select this article
Research: Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila
- Alison H. Nguyen,
- Weixiang Wang,
- Emily Chong,
- Kamalakar Chatla,
- and Doris Bachtrog
Genome Res. June 2022 32: 1074-1088; Published in Advance May 2, 2022, doi:10.1101/gr.275996.121
...to transposable elements (TEs) using dnaPipeTE (Goubert et al. 2015), as well as the proportion of short reads mapping to a curated TE library of D. pseudoobscura (Hill and Betancourt 2018). Because the three different Y Chromosomes are isogenic at the rest of the , these metrics can thus be used to estimate...
Select this article
Research: Combinatorial DNA methylation codes at repetitive elements
- Christophe Papin,
- Abdulkhaleg Ibrahim,
- Stéphanie Le Gras,
- Amandine Velt,
- Isabelle Stoll,
- Bernard Jost,
- Hervé Menoni,
- Christian Bronner,
- Stefan Dimitrov,
- and Ali Hamiche
Genome Res. June 2017 27: 934-946; Published in Advance March 27, 2017, doi:10.1101/gr.213983.116
...specific DNAmethylation/oxidation patterns of the repetitive elements in both cell types, which mainly affect CA repeats and evolutionarily conserved mouse-specific transposable elements including IAP-LTRs, SINEs B1m/B2m, and L1Md-LINEs. DNA methylation controls the expression of these retroelements, which...
Select this article
Resource: Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii
- Carlos Vargas-Chavez,
- Neil Michel Longo Pendy,
- Sandrine E. Nsango,
- Laura Aguilera,
- Diego Ayala,
- and Josefa González
Genome Res. January 2022 32: 189-202; Published in Advance December 29, 2021, doi:10.1101/gr.275761.121
...). For the standard 2La proximal breakpoint, Sharakhov et al. (2006) identified several DNA transposons and a SINE insertion. We also identified a cluster of MITE insertions, which are DNA transposons, and we additionally identified an Outcast (LINE) element (Fig. 4). Regarding the standard 2La distal breakpoint, we...
Select this article
Letter: Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes
- Tadasuke Ooka,
- Yoshitoshi Ogura,
- Md Asadulghani,
- Makoto Ohnishi,
- Keisuke Nakayama,
- Jun Terajima,
- Haruo Watanabe,
- and Tetsuya Hayashi
Genome Res. October 2009 19: 1809-1816; Published in Advance June 29, 2009, doi:10.1101/gr.089615.108
...and determined the DNA sequences of these subregions. In Strategy 3 (for Group 3), we searched for the presence of IS629 or ISEc8 in each segment by IS629-specific or ISEc8-specific PCRs and, if the segment contained either IS element, determined the sequence of the IS insertion site by direct sequencing...
Select this article
Research: The rate and spectrum of new mutations in mice inferred by long-read sequencing
- Eugenio López-Cortegano,
- Jobran Chebib,
- Anika Jonas,
- Anastasia Vock,
- Sven Künzel,
- Peter D. Keightley,
- and Diethard Tautz
Genome Res. January 2025 35: 43-54; Published in Advance December 2, 2024, doi:10.1101/gr.279982.124
...homologous recombination result in “hotspots” of structural variants near highly repetitive sequences (Coghlan et al. 2005; Nesta et al. 2021). Transposable elements (TEs) are repeated mobile DNA sequences whose activity can lead to mutations by means of excision and insertion. Such events can occur...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to McGurk and Barbash 28 (5): 714.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: