Searching journal content for articles similar to McCormack et al. 22 (4): 746.

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  1. Method: Improving quartet graph construction for scalable and accurate species tree estimation from gene trees
    • Yunheng Han and
    • Erin K. Molloy
    Genome Res. July 2023 33: 1042-1052; Published in Advance May 17, 2023, doi:10.1101/gr.277629.122
    ...of these methods to an avian phylogenomics data set.Estimating the evolutionary history for a collection of species is a fundamental problem in evolutionary biology. Increasingly, species trees are estimated from multilocus data sets, with molecular sequences partitioned into (recombination-free) regions...
  2. Method: In silico phylogenomics using complete genomes: a case study on the evolution of hominoids
    • Igor Rodrigues Costa,
    • Francisco Prosdocimi,
    • and W. Bryan Jennings
    Genome Res. September 2016 26: 1257-1267; Published in Advance July 19, 2016, doi:10.1101/gr.203950.115
    ...remains piecemeal and arduous. We designed software that performs these tasks and outputs anonymous loci (AL) or anchored enrichment/ultraconserved element loci (AE/UCE) data sets in ready-to-analyze formats. We demonstrate our program by applying it to the hominoids. Starting with human, chimpanzee...
  3. Method: Genome-scale coestimation of species and gene trees
    • Bastien Boussau,
    • Gergely J. Szöllősi,
    • Laurent Duret,
    • Manolo Gouy,
    • Eric Tannier,
    • and Vincent Daubin
    Genome Res. February 2013 23: 323-330; Published in Advance November 6, 2012, doi:10.1101/gr.141978.112
    ...C,Warnow T. 2009. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324: 1561. McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC. 2012. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal...
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